Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g2796 ATGGCATCATGTAGCAGGGTGGTTAATAAAATGGGAAGCGGTAGTAGTGAGGACCCGAATTCGGACGGTGAAATGCCCAGAATGGTAGGCGACGACGAGGAAAAAATGGTTGACATAGGAATGGAGGAGGATGAGTTTGAGGGTTTTAGATATAACCAGAGTGAAGGCATTGCCAACACGAAATTTGATGCAGTACCGGTTACCGCGTCGGATGTACGTAAGATGGAATTCAATAGTCCAGTGGAAGCCACTATTTTCTATGAAGAGTATAGTAGGGCAAAGGGTTTTGTGATGCGACAAGGAAAGAAGTTGAAAATTAAGAATGGTGATTTTGTTCGTTACACATATCTATGTAACAGACAAGGGTTCAGAGACAAGAAGTGGCTAGAGAAGGTGGATCGCAAGAGGGAGCACAAGGTGGTGACTCGTTGTGGATGTCCTGCGGAGATGCGTATTAAGCCTAAAGGGGACAGTGGGAGGTGGTATGTGTCTCGTTTTGTGGAGGAACATAACCACAAGCTCCTGCCTATGAAGTATGTGGACTATCTACCTGCTCACCGTAAGATCTCCGATGTTGATATTGCACACATGGAGAGCATGAGGCAAGTTGGGATATCAATTCCAAAGATCTATGAGTCTATTGCTGCACAGGCGGGTGGTTTTAATTTTGTTCCATTTACTAAGCGAGATATGGACAATGAAGAAGAGCTAGACTTCCGATCATCGTACGGGACGCCGGTCCTTCAAACGCAGTTTCCGGAGTTAGAAAAGTCAGGGGCAGTAAACTTCACAAGGAAAATTTTCTCAAGATATCGTGAGTCGCTTAAAAGGTGTGTTTGGGTCACTATATTAGAGTGCATTCAAGGTGTAGATAGGTGTGTGTATGTGACACAAAAGTATAGAAGACCTGATTCACGGTGGAATGTGGTACATATGAGAAGGAAAGAGGAGTTTGTTTGCAGTTGCCTGAGGATGGAGTCATTCGGTTTGCCATGTGTTCACATACTAGCAGTTTTGGTAAGGTTAGATTTTGTTTCCCTACCTAAGAATCTGGTGTTGCCGCGGTGGTCCAAGGCGGCGAAGGAGGATCTTTGTTATGAACGGTTAAGTGGCCAATATAGTGATGCCGGTGTTTTGTATCGGAGTAGAGTGGGCGCATTCTTGCAGCACTGCAAGCGGTTAGCAAAAGTTGCATGTGGTGTGGTTACTGGGACCACAATTGGCAACATTGGAGGAGGGGTTAGGGATCCTGTTAGTGTCAGGACTAAAGGCACAGGATGTGGCAATGAACCTCTTGGGTCTAGGGGTATCAAGCGGCGTAAGTGCAGCACCTGCGGGTGTCTCGGCCATCGAAGGACCCGCTGTCCCAATGCTCCACCACCATCAGCAGTGCCAACCCAGGAGGTCCCTGATTCTAAGAACAAGGGAGCATTGTTTGGTGCTGATTGTTGGAGCAGTTTGGATCCATGCATATGTGGTTATTCACTAGTGGTCATTTAG 1500 0.4653 MASCSRVVNKMGSGSSEDPNSDGEMPRMVGDDEEKMVDIGMEEDEFEGFRYNQSEGIANTKFDAVPVTASDVRKMEFNSPVEATIFYEEYSRAKGFVMRQGKKLKIKNGDFVRYTYLCNRQGFRDKKWLEKVDRKREHKVVTRCGCPAEMRIKPKGDSGRWYVSRFVEEHNHKLLPMKYVDYLPAHRKISDVDIAHMESMRQVGISIPKIYESIAAQAGGFNFVPFTKRDMDNEEELDFRSSYGTPVLQTQFPELEKSGAVNFTRKIFSRYRESLKRCVWVTILECIQGVDRCVYVTQKYRRPDSRWNVVHMRRKEEFVCSCLRMESFGLPCVHILAVLVRLDFVSLPKNLVLPRWSKAAKEDLCYERLSGQYSDAGVLYRSRVGAFLQHCKRLAKVACGVVTGTTIGNIGGGVRDPVSVRTKGTGCGNEPLGSRGIKRRKCSTCGCLGHRRTRCPNAPPPSAVPTQEVPDSKNKGALFGADCWSSLDPCICGYSLVVI* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g2796 499 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 231 368 IPR031052 GO:0006355
Amo09g2796 499 MobiDBLite consensus disorder prediction 1 20 - -
Amo09g2796 499 Pfam FAR1 DNA-binding domain 86 176 IPR004330 -
Amo09g2796 499 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 68 197 IPR031052 GO:0006355
Amo09g2796 499 MobiDBLite consensus disorder prediction 1 33 - -
Amo09g2796 499 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 231 368 - -
Amo09g2796 499 Pfam SWIM zinc finger 320 340 IPR007527 GO:0008270
Amo09g2796 499 ProSiteProfiles Zinc finger SWIM-type profile. 308 343 IPR007527 GO:0008270
Amo09g2796 499 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 68 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g2796 Amo-Chr9 106985801 106988449 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo09g2796 FAR1 6.6e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g2796 - - adu:107466802 460.299