Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g2788 ATGGAACAGAAGCACGTGCTGTTGTCTGCATTGACTGTTGGGGTTGGGTTGGGTGTTGGGTTGGGATTGAGCTCAGGGCAGAAATGGGTTGGAGGAGGGAGCCATGACTCTGATGAGCTTCCTGGGGAACAGATTGTTCAGGAGCTCAAGAAGCAGATCATTGATGGAAAGAACAGCAAGGTCACTTTTGACGAGTTCCCTTATTACTTGAGTGAGAAAACTCGAGTTTTGTTGACAAGTGCTGGATATGTTCATTTAAAACAACAACACTTCTCCAAACACATGAGGAACCTTTCACCAGTAAGCAGAGCTATTTTGCTCTCCGGACCTGCAGAAATTTACCAGCAAATGCTTGTCAAAGCTTTAGCACACTTTTTTGATTCCAAGTTGCTGCTGCTAGATATTACTGAATTCTCTTTGAAGATGCAGAGCAAATATGGATGCTCTAGAAGAGAATCATGTTTGAAAAGGTCCCTATCCGAGGTAACTATGGAGCGAATGACTGGTTTATTTAGTAACTTTTCACTCCTCCCGTCAGCAAGCGAAAGTAGAGGTACTGAAGGAAGAAGTTCTCAAGGTAGTCATCGTCGACATCGTAGTAGCGGACAAGAAAATAGACAAAGTAGCGGTGGAAATGAAAATTTTAACAATGCTTCAAAGCTCCGAAGGACTTCCTCTTCTTCATCTGATATAACTACCTCCCTGTTTGGTCCAAATGATTCAGGTTCTTTGCAGCGAACAAACCATGTTTCTTTTGATGAAAAGCTATTTGTGAAGTCACTTTACAAGGTCTTGGTTTCTGTCTCAGAAACTAGTGCCATTGTTCTATATATCAGGGATGTTGATAAGCTATTCCTTCGATTGCCGACGATGTATAGTATGTTGCAAAGGCTAATGAAGAAACTGACAGGGTCAGTGTTGATACTTGGTTCCCAAGTGGTGGATTCAGATTGCTGTAAAGAAGTTGATGAACGGCTAGGTATATTATTTCCTTACAACATTGAGATCAAACCCCCTGAAGATGAGACTCAATCTGGCAACTGGAAAGCCCAACTGGAAGAGGACATGAAAGTATTTCAGTTTCAAGATAACAGAAACCACATTGCTGAAGTTCTATCAACAAGTGGCATCGATTGTGATGACTTGCATTCAATCTGCCACTCTGACACTATGCTACTCAGTAACTACATTGAGGAAGTCGTGGCATCTGCAGTTTCCTATCATTTGATGAATACCAAGGATCCACAATACCGGAACGGAAAGCTAGTTGTATCGGCTAAGAGTCTCTGTCAGGCGCTGAATCTGTTCCAGGAAGGCAAAGTCAGTGGAAAGGATAATACAAAAACTAATGAGACCAAGGATGATGCGGGAGAAGATGGTACTGGTGCAAAGAATGATACAAGGAGCGATGCCCAAGCACCTGAAAAAAGCGAGGGAGAGAAATCTAACCCAGTAACAAAGAAGGATGGAGAGAATAGCACTCCTGCAAAAGCAGCTGAACCTCCTCCGGACAATGAGTTCGAGAAGCGAATAAGACCAGAGGTGATACCTGCAAATGAGATAGGGGTTACATTTGGAGACATTGGTGCATTGGATGAGATTAAAGAATCACTACAAGAGGCGGTGATGCTTCCCCTTAGAAGACCAGATCTCTTCAAAGGTGGCCTTCTAAAGCCTTGTAGAGGTATATTGCTTTTCGGGCCTCCTGGTACAGGAAAAACAATGCTTGCAAAGGCGATTGCAAATGAAGCAGGTGCAAGTTTCATTAATGTGTCAATGTCCACCATAACTTCAAAGTGGTTTGGGGAAGATGAGAAGAATGTTCGAGCTTTGTTCACGCTTGCAGCAAAGGTTGCTCCAACTATTATTTTTGTTGACGAGGTTGATAGCATGCTTGGGCAGCGTAACAGAGCCGGAGAGCACGAGGCAATGAGGAAGATTAAAAATGAATTCATGACTCATTGGGACGGACTATTGACAAAGCCTAGTGAGCAGATTCTGGTTCTTGCTGCAACCAACAGGCCATTTGATCTCGATGAGGCTATTATAAGACGGTTCGAGCGCAGGATTATGGTTGGTCTTCCATCTGCTGAAAACCGGGAAGGCATCTTGAAAACTCTTCTAAGCAAGGAAAAACATGAAAATATAGACTTCAAAGAGGTTGCAGCTATGACGGAAGGATATAGCGGGAGTGATCTTAAGAATTTGTGCATGACAGCGGCTTATCGGCCTGTTAGGGAGCTACTCAAGCAGGAGACCATGAAGGAAGTGGAACGGAAGAAGAAAGCGGCACAAGGCCAAATCTCAGAAGATATGTCCAATGCTACAGAGGATAAAAAAGGTCAATCAGTTACCCTGAGGCCTTTGACCATGGAAGACATTAGAAAGGCAAAGAATCAGGTGGCTGCAAGTTTTGCTGCAGAAGGATCAATAATGAGCGAGCTGAAGCAGTGGAATGATTTGTATGGAGAAGGAGGTTCAAGGAAGAAAGAGCAACTCACTTATTTCCTATAG 2514 0.434 MEQKHVLLSALTVGVGLGVGLGLSSGQKWVGGGSHDSDELPGEQIVQELKKQIIDGKNSKVTFDEFPYYLSEKTRVLLTSAGYVHLKQQHFSKHMRNLSPVSRAILLSGPAEIYQQMLVKALAHFFDSKLLLLDITEFSLKMQSKYGCSRRESCLKRSLSEVTMERMTGLFSNFSLLPSASESRGTEGRSSQGSHRRHRSSGQENRQSSGGNENFNNASKLRRTSSSSSDITTSLFGPNDSGSLQRTNHVSFDEKLFVKSLYKVLVSVSETSAIVLYIRDVDKLFLRLPTMYSMLQRLMKKLTGSVLILGSQVVDSDCCKEVDERLGILFPYNIEIKPPEDETQSGNWKAQLEEDMKVFQFQDNRNHIAEVLSTSGIDCDDLHSICHSDTMLLSNYIEEVVASAVSYHLMNTKDPQYRNGKLVVSAKSLCQALNLFQEGKVSGKDNTKTNETKDDAGEDGTGAKNDTRSDAQAPEKSEGEKSNPVTKKDGENSTPAKAAEPPPDNEFEKRIRPEVIPANEIGVTFGDIGALDEIKESLQEAVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVAPTIIFVDEVDSMLGQRNRAGEHEAMRKIKNEFMTHWDGLLTKPSEQILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREGILKTLLSKEKHENIDFKEVAAMTEGYSGSDLKNLCMTAAYRPVRELLKQETMKEVERKKKAAQGQISEDMSNATEDKKGQSVTLRPLTMEDIRKAKNQVAASFAAEGSIMSELKQWNDLYGEGGSRKKEQLTYFL* 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g2788 837 Pfam ATPase family associated with various cellular activities (AAA) 563 693 IPR003959 GO:0005524|GO:0016887
Amo09g2788 837 ProSitePatterns AAA-protein family signature. 666 685 IPR003960 GO:0005524|GO:0016887
Amo09g2788 837 Pfam AAA+ lid domain 715 758 IPR041569 -
Amo09g2788 837 Gene3D - 695 777 - -
Amo09g2788 837 SMART AAA_5 559 696 IPR003593 -
Amo09g2788 837 MobiDBLite consensus disorder prediction 759 785 - -
Amo09g2788 837 MobiDBLite consensus disorder prediction 767 783 - -
Amo09g2788 837 MobiDBLite consensus disorder prediction 441 511 - -
Amo09g2788 837 MobiDBLite consensus disorder prediction 204 238 - -
Amo09g2788 837 CDD AAA 561 694 - -
Amo09g2788 837 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 522 750 IPR027417 -
Amo09g2788 837 MobiDBLite consensus disorder prediction 444 487 - -
Amo09g2788 837 Coils Coil 754 774 - -
Amo09g2788 837 MobiDBLite consensus disorder prediction 179 238 - -
Amo09g2788 837 MobiDBLite consensus disorder prediction 189 203 - -
Amo09g2788 837 Gene3D - 522 694 IPR027417 -
Amo09g2788 837 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 1 837 - -
Amo09g2788 837 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 837 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g2788 Amo-Chr9 106930692 106935652 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g2788 523 768 Calmodulin-binding Proteins AT3G56690 40.000 1.56e-44 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g2788 - - gmx:100804099 1173.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo09g2788 09 106930692 106935652 Amo09g2421 09 99853347 99858936 PCT