Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g2741 ATGACTGTGATTGGGTTTGCGGTGAGCACCATGTTCATTGTGTTCGTGTGCACGAGGCTTGTCTGTGCTCGAATCCACTTGAATGCTTCAAGGAGATCCTTTCCCATTGCTTCCAGATCCAATCTTAGCATGATGGAACGGGGTTGGCATGGTCTTGAACGCACAGCTGTAGCTAAATTTCCAACAAAGAAGTTCAGTGACAAGTTCTTTTCGGCTGAAGAAAATTCTCAGTGTACAGTCTGCCTCTCGGAGTACCAAGGTGAAGACATTCTGCGTATCCTCCCCTACTGTGGACACTCATTCCATGTGACCTGCATAGACTTATGGCTGCAGCAGAATTCCACTTGTCCAGTTTGTCGAATATCATTGCGGGAATTTACTGAGAGAAAGCGGTTAATGCAACCCTTATTCAGCTCTGCTTTACGACCTCATCGCAGCGCAGAATCCATTGAGAACCCCCATTATCTCTGTATGATGGGTGATAATGGGTTACCATTGAGAACCCCAGACAACCATGGGGCTAATGTGATGCAAGAGGACAGTTTTCCATCCGAGGGTGGTGGAGCAGATGCTACAGATAGCATCACCTGTCTTATTCCGGACGATCTTGTTAAAGATGAAGAGAAGAGGCATATAGAGAGCCCGTCAAACTTCTAG 657 0.4673 MTVIGFAVSTMFIVFVCTRLVCARIHLNASRRSFPIASRSNLSMMERGWHGLERTAVAKFPTKKFSDKFFSAEENSQCTVCLSEYQGEDILRILPYCGHSFHVTCIDLWLQQNSTCPVCRISLREFTERKRLMQPLFSSALRPHRSAESIENPHYLCMMGDNGLPLRTPDNHGANVMQEDSFPSEGGGADATDSITCLIPDDLVKDEEKRHIESPSNF* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g2741 218 PANTHER OS11G0150450 PROTEIN 1 217 - -
Amo09g2741 218 SUPERFAMILY RING/U-box 71 126 - -
Amo09g2741 218 PANTHER OS11G0150450 PROTEIN 1 217 - -
Amo09g2741 218 SMART ring_2 78 119 IPR001841 -
Amo09g2741 218 ProSiteProfiles Zinc finger RING-type profile. 78 120 IPR001841 -
Amo09g2741 218 CDD mRING-H2-C3H2C2D_ZSWM2 77 120 - -
Amo09g2741 218 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 39 125 IPR013083 -
Amo09g2741 218 Pfam Ring finger domain 77 120 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g2741 Amo-Chr9 106064401 106066847 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g2741 4 123 C3H Transcription Factor Family AT4G10150 34.677 5.13e-19 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g2741 - - gmx:100786109 373.629
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g2997 19 137069112 137072010 Amo09g2741 09 106064401 106066847 hybridization