Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g2680 ATGAGTGAAGAGGAACTAGGTACTTTCTCAATGATGGATCCTTTGGATATGATAGATCCTTGGGATATGATAGACTTGGATGCGGATAGAAGGAATATGGTAGAGCAGTGTGCCATTGACGTGGGTGGCAATCAACCACCTCAGCCCAAGCCGCAGCCGGATGTAAGGGAGATTACAGTAGCTCAGTTTTTCAGTGACACGTGTGGTTATCCTCAGTTCGATATGTTTCTTGCTGATTGTGGTTATCAACTACCTGAGTCTCAGCTTCAGCTCCAACCTATGCAACCTCAGGTCTGGACTTGGGAGGAGAACAAAGCCTTTGAGTCAGTTATTGCCAATTCTTTTGAGTATGCTAAACGCAATTCCTGGGAGCTGATTGCTGCTCGTCTCCCTGGAAAGACCCCGGCTCAACTGCAAGAACGCTTCAAGAAGCTGATGAAGGACATCAATGTCATCCATAACGGTTATAATTCAAACACTCCTCTGAATAATGCTGCATCTGAGAACATGACTATGACAATGGCTGCTCCTACCACCACATTGGAACACAACCCTGTCTCCATCCCCATCATCAATGCAACAACAACAACCCCACCACCACCGCCTTATAACACTGATCATCAACATCACAGGGCGGAGGTAGTCGCGGCCGCAGCACCAATGGAGGCAGCAACAAGGGAACAAAGCCAATCTGCTAACACCAACAATACAAAGAAATATTCTCGGTGGACTGAAGATGAGCATAGATTATTTGTTAGAGGGTACCAAGCAGAAGGTACAAATTGGTCAAGAATTTCAGAATATTATGTCAAAACAAGAACTTATCATCAAATTAGCAGTCATGCTCAGAAATATTTTAGACATAAAGAAAGATTAGCTAAAGGAGAAAAGTTAAGAAAAAGCATTTATGATGTAATTTGA 921 0.4343 MSEEELGTFSMMDPLDMIDPWDMIDLDADRRNMVEQCAIDVGGNQPPQPKPQPDVREITVAQFFSDTCGYPQFDMFLADCGYQLPESQLQLQPMQPQVWTWEENKAFESVIANSFEYAKRNSWELIAARLPGKTPAQLQERFKKLMKDINVIHNGYNSNTPLNNAASENMTMTMAAPTTTLEHNPVSIPIINATTTTPPPPPYNTDHQHHRAEVVAAAAPMEAATREQSQSANTNNTKKYSRWTEDEHRLFVRGYQAEGTNWSRISEYYVKTRTYHQISSHAQKYFRHKERLAKGEKLRKSIYDVI* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g2680 306 ProSiteProfiles Myb-like domain profile. 99 146 IPR001005 -
Amo09g2680 306 CDD SANT 99 146 IPR001005 -
Amo09g2680 306 Pfam Myb-like DNA-binding domain 97 145 IPR001005 -
Amo09g2680 306 Pfam Myb-like DNA-binding domain 242 286 IPR001005 -
Amo09g2680 306 Gene3D - 94 158 - -
Amo09g2680 306 SMART sant 239 288 IPR001005 -
Amo09g2680 306 SMART sant 95 148 IPR001005 -
Amo09g2680 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 235 290 IPR017930 -
Amo09g2680 306 Gene3D - 242 291 - -
Amo09g2680 306 SUPERFAMILY Homeodomain-like 237 291 IPR009057 -
Amo09g2680 306 SUPERFAMILY Homeodomain-like 97 153 IPR009057 -
Amo09g2680 306 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 238 289 IPR006447 GO:0003677
Amo09g2680 306 CDD SANT 242 286 IPR001005 -
Amo09g2680 306 ProSiteProfiles Myb-like domain profile. 235 286 IPR001005 -
Amo09g2680 306 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 95 305 IPR043363 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g2680 Amo-Chr9 104816506 104820093 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo09g2680 Myb_DNA-binding 1.2e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g2680 - - adu:107466673 428.713