Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g2662 ATGGCGAATGGTATCACGCACGAGCCTTCTCCTTCCATGCTCGTGTACCGGTTTAACGCCTTACTTCCAAAGCGCCAAGGCTACCTCAAGGCTTTCTCTACCGAAGAAATTGTTCGGACGTATGGGCTATTGTTGTCAGAACTCACCTCCACTGTGAATCCCATCATTACCGATCTCACTATCATTGCCGGCCAGCAGACGAAACACGCCAAGGGCATCGCCGATGCCATTTGCAACCGGATTCTTGAGGTGCCTGCTGATAAAAAACTTCCTTCTCTCTATCTTCTGGACAGTATTGTGAAGAATTTTGGCCAGGAATATGTTAAACACTTCTCTTTACGTCTACCTCAAGTTTACTGCGAAGCATACAGGCAGGTCCAGCCCAATCTGCATTCTGTTCTGCAACGTCTCTTTGGTACCTGGTCAAAGATCTTCCCTCCCTCTGTCCTAAGCAATATTGAAGCTCAATTGCAATCTTCACCAGCAGTTAATAATCAACAACCCTTTGCTAATCACCTTGGGGCATATGATTTTCGTAGACCGATTCTTGGGGCACATGTTATTAAACCACAATCCTTGCAGCAGATGGAACACTCTAGTTCAATTATGGATAATGTTGGTGGTGATAGGTTGGACTCAACGGGAACTGTAGGTAATACAAGAGAAGGAGGGTTGGATGAATGGCAGCAAAAGAGATTTTCTAGTGATGGTTGGAACATATTTCAAACTTCTAAGACTTGTAATCTCAATGATGAACAACAACGTCAAAGTCCAAGAGCTCTTATTGAGGCATATGGTTGTGACAAAGGCCATGAAATTCCTAGTACTAAGCTTTTGTTGGTGGAGCAGCATCCTGGCAGAAATGGTTTAGGGAGCAAGTTTCCATTGGCATCATGGCAGGACACTGAAGAAGAGGAGTTTGATTGGAAAGATATGAATCCAGGATTAGTAGACTGTAGTAGAAACAGCAGTTCTATGCAATCAAGTGTTAGATTCTCCAGGAAAAGGAAGTTATCTAATGATCTATCTAATTCTTCACAGTACCCCTTCAATATGGGGGCTGCTCCCCCTGCTTTCAATGCTCATGCTACTCGTCCTTCCGGCTTGAATCCAGCATTTCCATTGCAAAAACGTCCTAGGAGTCTGTTTGAACCAATAAACGTTAATAATAACACCAATGGCCAAAGTTTGCATTTACATGGGGGAACCTTGCCACCTTTACGTCCAAGCCTCCCAACTGCTCCATCACAAATAATGTCTCATCCCCATGGCGATGATTCGGTGACAAGTCAACCACCACCTGCATATCTTGATTTGATTAGTTCACTAGTGAACCACGGTGTGATCTCGGTAACCAATCCACCCACCGGACTGGATTCCATTGGGACGGAGTTCGATCCAGATATCTTGAAGGTTCGTCATGAAGGTGTAATCAGTGCCTTATACGGTGATCTTCCTAGACAATGCACGAGCTGCGGTCTCCGATTCAAAAGGCAAGATGAACACAGTAGACATATGGATTGGCATGTGACTAGGAACCGAATGTCAAAAAGCCGGAAGCAGAAGGGGTCTCAAAAGTGGTTTGCAAGTGGGAGCCTGTGGCTAAGTGGTGCAGAGGCTTCGGGAAAGGAATCGATTCCGGGGTCGTTGGTTCCCGAGGAGACAGGGGAAATGAAAGACGACGAAGAGTTAGGCGTTCCTGCTGAAGAGGATCAGAGTAGATGTGCACTGTGTGGAGAGGGATTCGATGAGTTTTACAGCCACGAAATGGATGAGTGGATGTATAGAGGAGCCACATACCTTAAGGCACCCATGGGAACAACATTGGCCACCATGGACAGACATCAACTAGGGCCCATTGTTCATTCCAAATGCAGATCTGACTCTGACTCTACTATGCCTTCAACCAACAGTGAAGCTACCAAGAGAGTAGTAAGAGAAAAAGAATGCGGGTCGACCAAACATCAGTTTTGTGCACCCTTAATTAGGACTTACTAA 1998 0.455 MANGITHEPSPSMLVYRFNALLPKRQGYLKAFSTEEIVRTYGLLLSELTSTVNPIITDLTIIAGQQTKHAKGIADAICNRILEVPADKKLPSLYLLDSIVKNFGQEYVKHFSLRLPQVYCEAYRQVQPNLHSVLQRLFGTWSKIFPPSVLSNIEAQLQSSPAVNNQQPFANHLGAYDFRRPILGAHVIKPQSLQQMEHSSSIMDNVGGDRLDSTGTVGNTREGGLDEWQQKRFSSDGWNIFQTSKTCNLNDEQQRQSPRALIEAYGCDKGHEIPSTKLLLVEQHPGRNGLGSKFPLASWQDTEEEEFDWKDMNPGLVDCSRNSSSMQSSVRFSRKRKLSNDLSNSSQYPFNMGAAPPAFNAHATRPSGLNPAFPLQKRPRSLFEPINVNNNTNGQSLHLHGGTLPPLRPSLPTAPSQIMSHPHGDDSVTSQPPPAYLDLISSLVNHGVISVTNPPTGLDSIGTEFDPDILKVRHEGVISALYGDLPRQCTSCGLRFKRQDEHSRHMDWHVTRNRMSKSRKQKGSQKWFASGSLWLSGAEASGKESIPGSLVPEETGEMKDDEELGVPAEEDQSRCALCGEGFDEFYSHEMDEWMYRGATYLKAPMGTTLATMDRHQLGPIVHSKCRSDSDSTMPSTNSEATKRVVREKECGSTKHQFCAPLIRTY* 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g2662 665 MobiDBLite consensus disorder prediction 625 640 - -
Amo09g2662 665 CDD CID_Pcf11 38 159 - -
Amo09g2662 665 SMART 558neu5 36 158 IPR006569 -
Amo09g2662 665 Pfam CID domain 53 151 IPR006569 -
Amo09g2662 665 SUPERFAMILY ENTH/VHS domain 34 159 IPR008942 -
Amo09g2662 665 MobiDBLite consensus disorder prediction 319 343 - -
Amo09g2662 665 ProSitePatterns Zinc finger C2H2 type domain signature. 489 509 IPR013087 -
Amo09g2662 665 Gene3D - 29 160 IPR008942 -
Amo09g2662 665 MobiDBLite consensus disorder prediction 624 644 - -
Amo09g2662 665 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 12 630 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Amo09g2662 665 PANTHER POLYADENYLATION AND CLEAVAGE FACTOR HOMOLOG 4 12 630 - -
Amo09g2662 665 ProSiteProfiles CID domain profile. 33 161 IPR006569 -
Amo09g2662 665 MobiDBLite consensus disorder prediction 539 570 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g2662 Amo-Chr9 104505870 104509397 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g2662 400 630 C2H2 Transcription Factor Family AT4G04885 56.962 4.41e-81 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo09g2662 CID 1.6e-12 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g2662 K14400 - adu:107488587 426.017