Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g2655 ATGGCGAATGGTATCACGCACGAGCCTTCTCCTTCCATGCTCGTGTACCGGTTTAACGCCTTACTTCCAAAGCGCCAAGGCTACCTCAAGGCTTTCTCTACCGAAGAAATTGTTCGGACGTATGGGCTATTGTTGTCAGAACTCACCTCCACTGTGAATCCCATCATTACCGATCTCACTATCATTGCCGGCCAGCAGACGAAACACGCCAAGGGCATCGCCGATGCCATTTGCAACCGGATTCTTGAGGTGCCTGCTGATAAAAAACTTCCTTCTCTCTATCTTCTGGACAGTATTGTGAAGAATTTTGGCCAGGAATATGTTAAACACTTCTCTTTACGTCTACCTCAAGTTTACTGCGAAGCATACAGGCAGGTCCAGCCCAATCTGCATTCTGTTCTGCAACGTCTCTTTGGTACCTGGTCAAAGATCTTCCCTCCCTCTGTCCTAAGCAATATTGAAGCTCAATTGCAATCTTCACCAGCAGTTAATAATCAACAACCCTTTGCTAATCACCTTGGGGCATATGATTTTCGTAGACCGATTCTTGGGGCACATGTTATTAAACCACAATCCTTGCAGCAGATGGAACACTCTAGTTCAATTATGGATAATGTTGGTGGTGATAGGTTGGACTCAACGGGAACTGTAGGTAATACAAGAGAAGGAGGGTTGGATGAATGGCAGCAAAAGAGATTTTCTAGTGATGGTTGGAACATATTTCAAACTTCTAAGACTTGTAATCTCAATGATGAACAACAACGTCAAAGTCCAAGAGCTCTTATTGAGGCATATGGTTGTGACAAAGGCCATGAAATTCCTAGTACTAAGCTTTTGTTGGTGGAGCAGCATCCTGGCAGAAATGGTTTAGGGAGCAAGTTTCCATTGGCATCATGGCAGGACACTGAAGAAGAGGAGTTTGATTGGAAAGATATGAATCCAGGATTAGTAGACTGTAGTAGAAACAGCAGTTCTATGCAATCAAGTGTTAGATTCTCCAGGAAAAGGAAGTTATCTAATGATCTATCTAATTCTTCACAGTACCCCTTCAATATGGGGGCTGCTCCCCCTGCTTTCAATGCTCATGCTACTCGTCCTTCCGGCTTGAATCCAGCATTTCCATTGCAAAAACGTCCTAGGAGTCTGTTTGAACCAATAAACGTTAATAATAACACCAATGTGGGTCATGGTCCAAATAGAACTCTGTTTATGCATGACCAGTTGCCTAATCAACCTGGACCAATTTCCTCTAACCTGCAAAATCATGGACAAGCACCTCAACTACAGTTTCTTCCACCTCAAGTTCCATCTTCAACACAAATTAGTCATGGGAGCTCTTTGCAAGGACATGGTGCCTCAATAAGTATGCCCATCTCAAATCCATTACCTGATATGCAGGGCCAAAGTTTGCATTTACATGGGGGAACCTTGCCACCTTTACGTCCAAGCCTCCCAACTGCTCCATCACAAATAATGTCTCATCCCCATGGCGATGATTCGGTGACAAGTCAACCACCACCTGCATATCTTGATTTGATTAGTTCACTAGTGAACCACGGTGTGATCTCGGTAACCAATCCACCCACCGGACTGGATTCCATTGGGACGGAGTTCGATCCAGATATCTTGAAGGTTCGTCATGAAGGTGTAATCAGTGCCTTATACGGTGATCTTCCTAGACAATGCACGAGCTGCGGTCTCCGATTCAAAAGGCAAGATGAACACAGTAGACATATGGATTGGCATGTGACTAGGAACCGAATGTCAAAAAGCCGGAAGCAGAAGGGGTCTCAAAAGTGGTTTGCAAGTGGGAGCATGTGGCTAAGTGGTGCAGAGGCTTCGGGAAAGGAATCGATTCCGGGGTCGTTGGTTCCCGAGGAGACAGGGGAAATGAAAGACGAGGAAGAGTTAGGCGTTCCTGCTGAAGAGGATCAGAGTAGATGTGCACTGTGTGGAGAGGGATTCGATGAGTTTTACAGCCACGAAATGGATGAGTGGATGTATAGAGGAGCCACATACCTTAAGGCACCCATGGGAACAACATTGGCCACCATGGACAGACATCAACTAGGGCCCATTGTTCATTCCAAATGCAGATCTGACTCTGACTCTACTATGCCTTCAACCAACAGTGAAGCTACCAAGAGAGTAGTAAGAGAAAAAGAATGCGGGTCGACCAAACATCAGTTTTGTGCACCCTTAATTAGGACTTACTAA 2217 0.4524 MANGITHEPSPSMLVYRFNALLPKRQGYLKAFSTEEIVRTYGLLLSELTSTVNPIITDLTIIAGQQTKHAKGIADAICNRILEVPADKKLPSLYLLDSIVKNFGQEYVKHFSLRLPQVYCEAYRQVQPNLHSVLQRLFGTWSKIFPPSVLSNIEAQLQSSPAVNNQQPFANHLGAYDFRRPILGAHVIKPQSLQQMEHSSSIMDNVGGDRLDSTGTVGNTREGGLDEWQQKRFSSDGWNIFQTSKTCNLNDEQQRQSPRALIEAYGCDKGHEIPSTKLLLVEQHPGRNGLGSKFPLASWQDTEEEEFDWKDMNPGLVDCSRNSSSMQSSVRFSRKRKLSNDLSNSSQYPFNMGAAPPAFNAHATRPSGLNPAFPLQKRPRSLFEPINVNNNTNVGHGPNRTLFMHDQLPNQPGPISSNLQNHGQAPQLQFLPPQVPSSTQISHGSSLQGHGASISMPISNPLPDMQGQSLHLHGGTLPPLRPSLPTAPSQIMSHPHGDDSVTSQPPPAYLDLISSLVNHGVISVTNPPTGLDSIGTEFDPDILKVRHEGVISALYGDLPRQCTSCGLRFKRQDEHSRHMDWHVTRNRMSKSRKQKGSQKWFASGSMWLSGAEASGKESIPGSLVPEETGEMKDEEELGVPAEEDQSRCALCGEGFDEFYSHEMDEWMYRGATYLKAPMGTTLATMDRHQLGPIVHSKCRSDSDSTMPSTNSEATKRVVREKECGSTKHQFCAPLIRTY* 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g2655 738 Gene3D - 29 159 IPR008942 -
Amo09g2655 738 SUPERFAMILY ENTH/VHS domain 34 159 IPR008942 -
Amo09g2655 738 MobiDBLite consensus disorder prediction 320 343 - -
Amo09g2655 738 CDD CID_Pcf11 38 159 - -
Amo09g2655 738 MobiDBLite consensus disorder prediction 486 500 - -
Amo09g2655 738 SMART 558neu5 36 158 IPR006569 -
Amo09g2655 738 MobiDBLite consensus disorder prediction 612 643 - -
Amo09g2655 738 MobiDBLite consensus disorder prediction 698 713 - -
Amo09g2655 738 MobiDBLite consensus disorder prediction 434 453 - -
Amo09g2655 738 Pfam CID domain 53 151 IPR006569 -
Amo09g2655 738 PANTHER POLYADENYLATION AND CLEAVAGE FACTOR HOMOLOG 4 12 703 - -
Amo09g2655 738 MobiDBLite consensus disorder prediction 697 717 - -
Amo09g2655 738 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 12 703 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Amo09g2655 738 MobiDBLite consensus disorder prediction 461 503 - -
Amo09g2655 738 ProSitePatterns Zinc finger C2H2 type domain signature. 562 582 IPR013087 -
Amo09g2655 738 ProSiteProfiles CID domain profile. 33 161 IPR006569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g2655 Amo-Chr9 104393462 104398685 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g2655 473 703 C2H2 Transcription Factor Family AT4G04885 56.962 3.38e-80 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo09g2655 CID 1.8e-12 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g2655 K14400 - aip:107640327 598.586