Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g2632 ATGGGTCGTGAAACCCTTCTTCATCCACCACCACCATCCACCACCGCCCCAACAGCCACACACACCCCACCACCACCGCCGCCGCCACTGCCGTCTCTACCTTCATTGACACAAGCAGGACCATCAGGAGGAGTATCAGCATCTGCACCTTCACCATCTGCTTCACCTTCTTCTCCTGCTATTGTTGCTACTACTGCTGTGGCTACTGCAGTTGCTGCTCCTCCTACCTCTCTTGCTCCTGGTTTCAGGTTCCATCCTACTGATGAGGAGCTTGTTATCTATTACCTCAAGCGCAAGGTTTGCGGCAAAAGCTTCCGATTTGATGCAATTTCTGAGGTTGACATCTACAGGAGCGAACCCTGGGACCTTGCAGATAAGTCGAGGTTGAAGACTAGGGACCAAGAATGGTACTTCTTTAGTGCACTGGACAAGAAGTATGGCAATGGTGGGAGGATGAACAGGGCCACAAGCAAAGGATACTGGAAGGCTACAGGGAACGATCGTCCGGTTAAGCATGAACAAAGGACTGTGGGGTTGAAGAAAACTCTGGTGTTCCATAGTGGAAGAGCCCCAGATGGTAAGAGGACCAATTGGGTCATGCATGAGTACCGACTCGTCGACGAAGAGCTGGAGAGGGCTAGGTCTGGATCCTCTCAGCCTCAGGATGCATATGTTTTGTGTAGAGTTTTTCACAAAAATAACATAGGACCTCCGAATGGGCAACGTTATGCACCTTTCGTTGAAGAGGAGTGGGATGATGCATCGGCATTGGTTCCTGGGGCAGAACCTGTGGAGGATGTTACCGTCACTGTTGCCCATCCTCTACGCATTGAAAGCAACGGTCGCACTTTATGCAGCGACAGGAGAAACAATGTTGCACAGGATACTCAATCTAACAACAAAGTTCCATTTGATGTGAACAAGCTTCCCATTGAAACTCAAAGTCTGCTAGCTGTCTGCAAAAGGGAGAGTATGGCCGAGTTTCCATCACCTGAAAAGGAGGATAACTCGAAGCGTCAGATCGATGAGTATCCTTTGCCACAAACAGAAAACACCAAGCCTATCTCTCAAATATACAAGAGGAGGAGGCATTATTTGAATGTCAACCATTCAAATGTTAACGGAGATTCAGTCCGAACCATCCAAGAACCGCCATGTTCATCAACAATAACCACCGCCGCAACGACACTCCCGACGGTCGCCACCACAGCCTCCACTGCAATAACCAACGTTGCACCTAAAAAACATTTCTTGTCTGCACTGGTGGAGTTTTCTTTGATGGAATCCCTCGAATCAAAGGGAAATGCATCCGTTCAACCACCAGAGTTTGATGATGCTTCCTTGGAGGCATCCGTGCCGCCAAATTGTGTTAAGCTCATCAAACGCATGCAGGGCGAGATTTACAAACTTTCCGAGGAAAGGGAGACTATGAGGTTTGAGATGATGAGCGCACAAGCAATGATTAACATGCTCGAGTCGCGCATTGAAATTTTGAGCAAAGAAAATGAGGAACTGAAGAGCATGATTAATAACAATCCTTAG 1542 0.4818 MGRETLLHPPPPSTTAPTATHTPPPPPPPLPSLPSLTQAGPSGGVSASAPSPSASPSSPAIVATTAVATAVAAPPTSLAPGFRFHPTDEELVIYYLKRKVCGKSFRFDAISEVDIYRSEPWDLADKSRLKTRDQEWYFFSALDKKYGNGGRMNRATSKGYWKATGNDRPVKHEQRTVGLKKTLVFHSGRAPDGKRTNWVMHEYRLVDEELERARSGSSQPQDAYVLCRVFHKNNIGPPNGQRYAPFVEEEWDDASALVPGAEPVEDVTVTVAHPLRIESNGRTLCSDRRNNVAQDTQSNNKVPFDVNKLPIETQSLLAVCKRESMAEFPSPEKEDNSKRQIDEYPLPQTENTKPISQIYKRRRHYLNVNHSNVNGDSVRTIQEPPCSSTITTAATTLPTVATTASTAITNVAPKKHFLSALVEFSLMESLESKGNASVQPPEFDDASLEASVPPNCVKLIKRMQGEIYKLSEERETMRFEMMSAQAMINMLESRIEILSKENEELKSMINNNP* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g2632 513 Gene3D NAC domain 87 235 IPR036093 GO:0003677|GO:0006355
Amo09g2632 513 Coils Coil 481 508 - -
Amo09g2632 513 ProSiteProfiles NAC domain profile. 78 232 IPR003441 GO:0003677|GO:0006355
Amo09g2632 513 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 70 510 - -
Amo09g2632 513 MobiDBLite consensus disorder prediction 326 355 - -
Amo09g2632 513 Pfam No apical meristem (NAM) protein 80 205 IPR003441 GO:0003677|GO:0006355
Amo09g2632 513 MobiDBLite consensus disorder prediction 36 59 - -
Amo09g2632 513 MobiDBLite consensus disorder prediction 1 59 - -
Amo09g2632 513 SUPERFAMILY NAC domain 68 233 IPR036093 GO:0003677|GO:0006355
Amo09g2632 513 MobiDBLite consensus disorder prediction 326 341 - -
Amo09g2632 513 MobiDBLite consensus disorder prediction 10 35 - -
Amo09g2632 513 PANTHER NAC DOMAIN-CONTAINING PROTEIN 78-LIKE 70 510 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g2632 Amo-Chr9 103990326 103996724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g2632 421 506 NAC Transcription Factor Family AT3G10480 41.111 1.90e-10 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo09g2632 NAM 5.1e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g2632 - - adu:107466647 907.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g2895 19 134195754 134201919 Amo09g2632 09 103990326 103996724 hybridization