Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g2564 ATGCAGACCAACTGTGTTGTGGATGAAAAATTTGTCCCAAAGGTGGGGATGATTTTCAAGACACTAGAAGAAGCTGGAAAGTTCTACAAACATTATTCCAAACTTGCCATTTTTCTACCGAAAATAAGGAACACGACTCGGGACGGAGACAAGATTAAGAATCAACTAATTGTATGCACCAGAGAGGGGAAGTGGAAATCCAAGATATCTCCAACTTTGAAGACAAACCCTTCAGCTGGGTTAAACTGTCCAGCCAGAATTTATGTACACATAATGAAGGACGTCGGTCTTTGGACAATTTCCAAAGTTGTTTTGAATCACTCACATCCTTGCTGTCCAGACTGGGCAGAGATGCTCAAACAACACAGGGAGCTTAGCATGTTTCTGTACGAGGATCGGCATATATGGATTCCAGTTTACCTGGATCACCACTTCTGGGCTGGGATGAGAAGCACACAAAGGAGCGAGAGCATGCATTCATTTTTCAACAAGTTCATCACACTGAACAGCTCCCTGAGACAATTCGTGAAGCAATACGACAATTGCCTAGCAAGCAGAGAGCAAAGAGAAAGAGAATTCGATGCTGCAGATTTTCACACCGTGATACCGTGTGCAACAAAATCAGCAATAGAGGCACAGTTTCAGCATGTGTATACCCACGAGAAGTTCAGGGAAGTTCAAGCTCAATTCAGAGGTAAAGTGAACTGTATCACAAGATCAATGCATTCCACCCTAGGTTTCACAACATACGAAGTCGTAGAGCAGGTTTCCAACTCCACATTCAACAAGTTTGTCATCACCTACGATGCAATATCACGAGAGGTAAAGTGCCAGTGCTTGCTGTTCGAGTCAAGGGGCATATTGTGCCGCCATTCCCTAAGCGTCCTAAGCTTTGAGCGAGTGGATAACGTGGCACCGAAATACATACTAGAACGCTGGAGCAAGAACATAAAGAGGAGGCACACACACATCAAGAGCAGCCAAGATGAGCCTCTACTGGAGCCAAGAAGTAAGAGATTCGATGAATTGGTGTTTCGGTCACACAATATATGTGAATTTGCATCCGAGTTCGAGGAGTTGACCGGAATTTTGCACCGAGTGTTTGACAAGTTGAACCTTTTAGACGCCAGATCATCGATTCAGTCAAGCTCCACTCTTTACAATGCACCAGATATGAATTATCCAAGAGAGGATTATACGAAGAGTTCAGGTGTTTCTGAAACTGAATACTGA 1233 0.438 MQTNCVVDEKFVPKVGMIFKTLEEAGKFYKHYSKLAIFLPKIRNTTRDGDKIKNQLIVCTREGKWKSKISPTLKTNPSAGLNCPARIYVHIMKDVGLWTISKVVLNHSHPCCPDWAEMLKQHRELSMFLYEDRHIWIPVYLDHHFWAGMRSTQRSESMHSFFNKFITLNSSLRQFVKQYDNCLASREQREREFDAADFHTVIPCATKSAIEAQFQHVYTHEKFREVQAQFRGKVNCITRSMHSTLGFTTYEVVEQVSNSTFNKFVITYDAISREVKCQCLLFESRGILCRHSLSVLSFERVDNVAPKYILERWSKNIKRRHTHIKSSQDEPLLEPRSKRFDELVFRSHNICEFASEFEELTGILHRVFDKLNLLDARSSIQSSSTLYNAPDMNYPREDYTKSSGVSETEY* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g2564 410 Pfam FAR1 DNA-binding domain 27 112 IPR004330 -
Amo09g2564 410 ProSiteProfiles Zinc finger SWIM-type profile. 264 300 IPR007527 GO:0008270
Amo09g2564 410 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 120 368 IPR031052 GO:0006355
Amo09g2564 410 MobiDBLite consensus disorder prediction 391 410 - -
Amo09g2564 410 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 9 120 IPR031052 GO:0006355
Amo09g2564 410 PANTHER OS03G0843700 PROTEIN 120 368 - -
Amo09g2564 410 PANTHER OS03G0843700 PROTEIN 9 120 - -
Amo09g2564 410 SMART 26again6 275 302 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g2564 Amo-Chr9 102712220 102714858 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo09g2564 FAR1 4.1e-08 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g2564 - - aip:110267379 440.654