Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g2555 ATGAATCATTTCTATCTGTCAGTATTTTTTATCTCTGATTTAACTGTCTTAAGGATCTATCTATATATGAAGGATACATTTCCAAAGATAGAAATCTTCACACAAAAGGAATTGCCAACTTGTTTGCAAGAAACGGCAATGGAATCAAAGTTTTTGGACAACGACAATGCAACCATAAGAAGTTCTCATCACTCTCTTACTGCTTCTCATCATGTTCATGCAAACTATTCAATGGAATCACCTGAAAGGCTTCTTTTATGTTCACATTCAATGAAAGAAGAGTTACCACCCTATGATGCCACTTTGATTGGCCATGTCCCTTCAAGTTTCCATGGCAATGAAGACACAAGAAATGGGCAAGAGAAAAACCATACCTTTCAAAAATTCAATAACAACCCTCTGAATCTATTGGAGACTCTGCCAGCATTAACCATAGCACCCTCTTCTTCTGATGCCTCACCACCTTCTTTGATTTCTCCTCCTTCGTCACACAAATTTCCAAACTTGACCTTGTTCTTGCAGGAAACTTCCATGCTCTACTCATCATCCTCGCATCTAAAAAGTGGTGAATCCATGTCATCAAAATCTTCAAACTCCACATTTCCATTGTCGCCACTCCGCCAAACTCAGTGCCAAACAACCACCGCCGATCCACACAAAATCACCAAGAATCTATCAAACATGAGGAGATCCAAGTCTTTCAGTGACCACCACAATTGGTTGAGCACAAGGACACAACCTCTTAAGTGCAGCGGCGGAGGTGGAAGAGTCAACAACAACAACAAGCTTTTCAAAGGGGTGAGACAAAGACACTGGGGAAAATGGGTTGCTGAGATAAGATTACCAAGAAACAGGACAAGGGTATGGTTAGGAACATTTGATACAGCTGAAGATGCAGCCATTGCATATGATACTGCAGCATATATACTAAGAGGAGATTATGCACAGTTGAATTTCCCTGAATTGAAGCATGTGATCAAGGCCAATTCTCTGAATGGAACCATTTCAGCACTCGTTGAGGCAAAACTACAAACAGTTCATCTGCATAAGAAGAATCCCAATAACAATAACAATAACAATAGCAGCAACAACAATTATGATGATTCACCACCATCAGCAGTTTCAGCATGCAAAAATAATGGCAATAAGGGTTCATCATCAAGCATAATGGAGTTGCAGTTAGAGGAAAATGAGAGAAGCAAAAGTGGCTCACTTTCTCATCATCAAGTTTTGGATGTGGAAGGTGTTCAATTGAGCAGAATACCATCATTGGATATGGACCTTATTTGGGATGCACTTTTAGTCTCTGATTCATGA 1317 0.3986 MNHFYLSVFFISDLTVLRIYLYMKDTFPKIEIFTQKELPTCLQETAMESKFLDNDNATIRSSHHSLTASHHVHANYSMESPERLLLCSHSMKEELPPYDATLIGHVPSSFHGNEDTRNGQEKNHTFQKFNNNPLNLLETLPALTIAPSSSDASPPSLISPPSSHKFPNLTLFLQETSMLYSSSSHLKSGESMSSKSSNSTFPLSPLRQTQCQTTTADPHKITKNLSNMRRSKSFSDHHNWLSTRTQPLKCSGGGGRVNNNNKLFKGVRQRHWGKWVAEIRLPRNRTRVWLGTFDTAEDAAIAYDTAAYILRGDYAQLNFPELKHVIKANSLNGTISALVEAKLQTVHLHKKNPNNNNNNNSSNNNYDDSPPSAVSACKNNGNKGSSSSIMELQLEENERSKSGSLSHHQVLDVEGVQLSRIPSLDMDLIWDALLVSDS* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g2555 438 CDD AP2 262 322 IPR001471 GO:0003700|GO:0006355
Amo09g2555 438 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF062 31 437 - -
Amo09g2555 438 SUPERFAMILY DNA-binding domain 263 320 IPR016177 GO:0003677
Amo09g2555 438 PRINTS Ethylene responsive element binding protein signature 286 302 IPR001471 GO:0003700|GO:0006355
Amo09g2555 438 PRINTS Ethylene responsive element binding protein signature 264 275 IPR001471 GO:0003700|GO:0006355
Amo09g2555 438 SMART rav1_2 263 326 IPR001471 GO:0003700|GO:0006355
Amo09g2555 438 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 31 437 - -
Amo09g2555 438 MobiDBLite consensus disorder prediction 184 216 - -
Amo09g2555 438 Gene3D AP2/ERF domain 263 321 IPR036955 GO:0003700|GO:0006355
Amo09g2555 438 Pfam AP2 domain 264 311 IPR001471 GO:0003700|GO:0006355
Amo09g2555 438 MobiDBLite consensus disorder prediction 349 388 - -
Amo09g2555 438 ProSiteProfiles AP2/ERF domain profile. 263 320 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g2555 Amo-Chr9 102614135 102615463 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g2555 165 433 AP2-EREBP Transcription Factor Family AT4G13620 43.911 6.71e-57 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo09g2555 AP2 3.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g2555 - - aip:107616692 707.983