Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g2488 ATGGCTTCAACCACTCTTAGCAAACAAAAGAAGCCTTCTTCTGAGTCCTCATCAAGATGGACAGCAAAAGAAAATAAGCTCTTTGAGAAGGCACTTGCAGAATATGATAAAGATACTGCAGATAGGTGGCAGAATGTGGCAAAAGCAGTTGGTGGAAAATCTGTTGATGAAGTTAAGAGACATTATGAAATTCTCTTAGAAGATCTCAGACACATTGAGTCCGGCCATGTTCCAATTCCTAACTACAAGTCCACACCTTCAACCACCACCAATCTTGATGAAGAACAGAGGCTTTTGAAGTATCTTAAACTGAGTTGA 318 0.3994 MASTTLSKQKKPSSESSSRWTAKENKLFEKALAEYDKDTADRWQNVAKAVGGKSVDEVKRHYEILLEDLRHIESGHVPIPNYKSTPSTTTNLDEEQRLLKYLKLS* 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g2488 105 CDD SANT 19 66 IPR001005 -
Amo09g2488 105 PANTHER PROTEIN RADIALIS-LIKE 3 1 85 - -
Amo09g2488 105 Pfam Myb-like DNA-binding domain 18 62 IPR001005 -
Amo09g2488 105 Gene3D - 11 79 - -
Amo09g2488 105 SUPERFAMILY Homeodomain-like 18 74 IPR009057 -
Amo09g2488 105 MobiDBLite consensus disorder prediction 1 21 - -
Amo09g2488 105 ProSiteProfiles SANT domain profile. 15 70 IPR017884 -
Amo09g2488 105 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 85 IPR044636 GO:0003700
Amo09g2488 105 SMART sant 16 68 IPR001005 -
Amo09g2488 105 ProSiteProfiles Myb-like domain profile. 12 66 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g2488 Amo-Chr9 101372610 101374621 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Amo09g2488 Myb_DNA-binding 1.1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g2488 - - ahf:112788989 199.519