Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g2415 ATGGTATCGAAGAACCCGAACCCCTCAGAGGGATTCTACCTCGATCCCAGTGCGCTCCCCAGCCTCGTTCCGTTGGCCGCAACCCCGGGGACGTCCACCGCCAACTCGGCGGAGGACCCCGCCAAGAAGACGCGGAAGCCATACACTATAACTAAATCTAGAGAGAGCTGGACCGAACCCGAGCACGACAAGTTCCTCGAAGCTCTTCAACTGTTTGACCGTGACTGGAAAAAGATTGAAGCATTTGTTGGATCGAAGACAGTTATCCAGATACGTAGCCATGCACAGAAATACTTTCTAAAAGTTCAGAAGAGCGGGACAAGTGAACATCTTCCTCCACCCAGACCAAAACGAAAAGCCGCTCATCCATATCCTCAGAAAGCTTCTAAAAATGCACCAGTACTCGCGCAAGTATCTGGATCATTTCAGTCTTCATCTGCTTTGCTTGAATGTGGACATGTCCTGCAGCCTGATTCTTCAGCAATGCTTAAAACACCTATTGTTAGCACTGCGGTGTCTTCCTGGTCAAACAACACCCTGCAGCAAAAAACCAATGTATTGCATGGGCAAAAAGTAAATAACTGTTGTAGTAGCAGCGAAAGCACTCCCAGAGCACAAGCACCTGGTGAATCTAATGTTCAAGGGAATAATAGCCATCCTTTGAGAGTTCTTCCGGATTTCACTCAAGTGTACCGGTTCATTGGCAGTGTATTTGACCCAAGCATAACTGGGCATCTACAGAAACTAAAAAGGATGGATCCTATAGATGTTGAAACGGTGCTACTACTGATGAGAAATCTGTCTATCAATTTAAGGAGCCCAGATTTTGAGGATCATAGAAGGTTGCTTGCCTCGTATGAGGTGGAACTTGAAACAGACAGCTACATCAATGCAGATAGACCTATGACTGGTGGGCAGTTGAAGACAGCTACTTAG 936 0.4679 MVSKNPNPSEGFYLDPSALPSLVPLAATPGTSTANSAEDPAKKTRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKSGTSEHLPPPRPKRKAAHPYPQKASKNAPVLAQVSGSFQSSSALLECGHVLQPDSSAMLKTPIVSTAVSSWSNNTLQQKTNVLHGQKVNNCCSSSESTPRAQAPGESNVQGNNSHPLRVLPDFTQVYRFIGSVFDPSITGHLQKLKRMDPIDVETVLLLMRNLSINLRSPDFEDHRRLLASYEVELETDSYINADRPMTGGQLKTAT* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g2415 311 MobiDBLite consensus disorder prediction 39 57 - -
Amo09g2415 311 SUPERFAMILY Homeodomain-like 48 104 IPR009057 -
Amo09g2415 311 MobiDBLite consensus disorder prediction 24 57 - -
Amo09g2415 311 PANTHER SWI/SNF COMPLEX-RELATED 3 294 - -
Amo09g2415 311 PANTHER PROTEIN REVEILLE 6 3 294 - -
Amo09g2415 311 CDD SANT 56 99 IPR001005 -
Amo09g2415 311 ProSiteProfiles SANT domain profile. 52 103 IPR017884 -
Amo09g2415 311 MobiDBLite consensus disorder prediction 104 131 - -
Amo09g2415 311 Pfam Myb-like DNA-binding domain 54 99 IPR001005 -
Amo09g2415 311 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 52 101 IPR006447 GO:0003677
Amo09g2415 311 Gene3D - 57 104 - -
Amo09g2415 311 ProSiteProfiles Myb-like domain profile. 49 99 IPR001005 -
Amo09g2415 311 MobiDBLite consensus disorder prediction 195 218 - -
Amo09g2415 311 SMART sant 53 101 IPR001005 -
Amo09g2415 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 49 103 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g2415 Amo-Chr9 99791933 99795935 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Amo09g2415 Myb_DNA-binding 3.8e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g2415 - - aip:107619038 544.658