Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g2408 GAGCATGCCTTGAAGGCATTGCAGGAAAAGGAAAAAGAACCGGTTGTACGTGAATCGGAACCAGATCCAACTACTGAAGTGCTTTTTCTTTGCTGCTATAAAGGATATGGAATGACGTTCATTGATGCCGGTGCATTGAGGAAACATTCTAACATTCATGGAGAGAGACAATTTGTTTGTCACTATGAAGGGTGCAGAAAGAAATTTTTTGATAGCTCAAAGTTGAAAAGAAATTTTCTCATTCACACAGGGGAGAGAGATTTTGTATGTCCTCATGAAGGCTATGGTAAGTATGACAATTATTGA 306 0.3889 EHALKALQEKEKEPVVRESEPDPTTEVLFLCCYKGYGMTFIDAGALRKHSNIHGERQFVCHYEGCRKKFFDSSKLKRNFLIHTGERDFVCPHEGYGKYDNY* 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g2408 101 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 87 IPR013087 -
Amo09g2408 101 Gene3D Classic Zinc Finger 25 98 - -
Amo09g2408 101 SUPERFAMILY beta-beta-alpha zinc fingers 47 94 IPR036236 -
Amo09g2408 101 MobiDBLite consensus disorder prediction 1 20 - -
Amo09g2408 101 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 9 97 - -
Amo09g2408 101 PANTHER TRANSCRIPTION FACTOR YY1-RELATED 9 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g2408 Amo-Chr9 99481189 99483264 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g2408 1 97 C2H2 Transcription Factor Family AT4G06634 67.010 4.10e-32 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo09g2408 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g2408 - - jre:109002316 169.859