Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g2355 ATGAGAGAGCTTGAGGGAGAGAGTGGCGAGAAGGAGACCCAGGGAAGAGAGATGTTGAGGTTCAGGGTTGATTCAAGGGCATTCAGAGAAGAGAAGCAGTTAGGGTTTTCATCCAACTGCAATCCCTGCCATTCTCATCCCCTTCCTCTGCTGCAAATTTCCGCGACCTGCTTCCGCCGACGCGCCACGCTTCCCCGCCGCCGCGCCACGCCTCCGCCGCCGCCATGCCTCCCCACGCCTCCCACACTCAATAAGATAAGAGGAACACGTGACCATGATTTACCAGATGATAAATCCAAATGGGAATGCGTGAGGAAAGGGGTTTGCTACATTTGCTGCGAAAGCAATATTGATTCTCTCTTGTACAGATGTGGGCACATGTGCACATGTTCTAACTGTGCTAATGATTTGCACCGAATTGGAAGGAAGTGTCCAATGTGTCAAGCACCAGTTGTTGAAGTAATTCGTGCTTATTCCATACTATAG 486 0.5062 MRELEGESGEKETQGREMLRFRVDSRAFREEKQLGFSSNCNPCHSHPLPLLQISATCFRRRATLPRRRATPPPPPCLPTPPTLNKIRGTRDHDLPDDKSKWECVRKGVCYICCESNIDSLLYRCGHMCTCSNCANDLHRIGRKCPMCQAPVVEVIRAYSIL* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g2355 161 ProSiteProfiles Zinc finger RING-type profile. 109 148 IPR001841 -
Amo09g2355 161 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 87 161 - -
Amo09g2355 161 MobiDBLite consensus disorder prediction 67 81 - -
Amo09g2355 161 SUPERFAMILY RING/U-box 108 152 - -
Amo09g2355 161 Pfam Zinc finger, C3HC4 type (RING finger) 107 153 - -
Amo09g2355 161 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 159 IPR013083 -
Amo09g2355 161 MobiDBLite consensus disorder prediction 64 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g2355 Amo-Chr9 97099444 97100582 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g2355 109 156 C3H Transcription Factor Family AT3G06140 37.500 7.48e-06 42.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g2355 - - adu:110275746 169.088