Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g2344 ATGAATGTTTTTTTGGTGCTGGACCTGTGTAGAAGCCCCACCCCTGAGAAGGCTGCGCTGGTGGCTACTGCACCCAACACACAGCAAGAGGGTCTTGACCAGCTGGAGGACCATGTGCTGCACAATCTTGATTGGGACTCCATCACGAAGGACCTTGGATTCCACGAAAACTCCAACCCACCCTTGTTCAAGACCACCCTCCCTAATGTCCCTGACTTCTCTCCTTTCTTCGACCCACACTTCGAATTCCCAGACATTCAAACCATATCCTACAACTACGCCAATGCCACTGCCACCCTCGACCGCCTCCTCCACGACACCTCCAATAATTCTCCCGCCACCGGCTTCGATTTCATAGAGGAGCTCATTCGTGCTGCCGATTGCTTCGACACCAACCACCTCCACGTCGCTCACGTTAATGTGAAAGAGAAGAGGAATCTAAACTATTTTTTATTATATTCTTTTTCTTCTGTAGAATATATATTAATTACTTTAAGTCACAATGAATCAATCGACTGTAGTCCCAAACTTTACCTCTTCCCCAATCTCTATGAATCTCATTGCCTTTCTTATCCTACCTCTAATTCTGTCTATACTGCTCCTCTACAACTAGTCTACATAGATCTCTGGGGCTCTGCTCCTATTTCTGATTTGAATGGCAACTATTACTTTGTGAATTTCATTGATGCTTATAGTAAATATACATGGTTGTATCTTATTAAAACCCGGTCTCAAGTCAAATCAGTTTTTAAATGTTTCCAGCATATGGTTGAATTGCAATTTAACATTAGAATTAAAATGCTTCAGTCTGACAATGCTGCTGAATATGTAAGTTTAGCCAAGGACTTGCAGGCATAA 858 0.4301 MNVFLVLDLCRSPTPEKAALVATAPNTQQEGLDQLEDHVLHNLDWDSITKDLGFHENSNPPLFKTTLPNVPDFSPFFDPHFEFPDIQTISYNYANATATLDRLLHDTSNNSPATGFDFIEELIRAADCFDTNHLHVAHVNVKEKRNLNYFLLYSFSSVEYILITLSHNESIDCSPKLYLFPNLYESHCLSYPTSNSVYTAPLQLVYIDLWGSAPISDLNGNYYFVNFIDAYSKYTWLYLIKTRSQVKSVFKCFQHMVELQFNIRIKMLQSDNAAEYVSLAKDLQA* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g2344 285 Gene3D - 194 285 IPR036397 GO:0003676
Amo09g2344 285 SUPERFAMILY Ribonuclease H-like 197 279 IPR012337 -
Amo09g2344 285 PANTHER GAG-POL-RELATED RETROTRANSPOSON 96 278 - -
Amo09g2344 285 Pfam Integrase core domain 199 278 IPR001584 GO:0015074
Amo09g2344 285 PANTHER RIBONUCLEASE H-LIKE DOMAIN, GAG-PRE-INTEGRASE DOMAIN, GAG-POLYPEPTIDE OF LTR COPIA-TYPE-RELATED 96 278 - -
Amo09g2344 285 ProSiteProfiles Integrase catalytic domain profile. 197 285 IPR001584 GO:0015074
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g2344 Amo-Chr9 96883749 96889305 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g2344 35 139 GRAS Transcription Factor Family AT4G36710 29.365 6.42e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g2344 - - aip:107640116 259.61