Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g2341 ATGGATTTCGATTCCCTCGACGATTTCTTCGATTTCGATGATTTCATCCACCATTCTCCCCCTCCGCCCTCCGATTTCCTGTGGTCCAATCCAAGTGTGAGCTCTGAAATTGGCTTTTCAGCAGGTGGTAGTGGTGGCGGTGGCAGTGATGTCTGTCAAGAGAAAACCAAAAAGAGGAGACATGCTAGTTCATGTTGCAAAGCAGGGACAAAGGCTGGCCGTGAAAAGTTGCGGAGGGAGCGACTCAATGAAAGGTTTTGTGACTTGAGTGTTGTTTTAGAACCTGGAAGACCTGCGAAAGCTGATAAAATGGCTATACTTGATGATGCTATAAGAGTTTTGAAACAACTAAAAACTGAAGCTGAGGAACTCAAACAAACGAATGAAAAATTGTTAGAAGAAATAAAATGTTCTAAGGCTGAGAAAAATGAACTTCGAGAAGAGAAACTTGTTCTGAAAGTAGATAAAGAAAGGATTGAGAGACAGTTGAAAGATTTGCCAATTCAACCTGCACCTGCAGGGTATATGCCTCCCAATCTAGCTCCTTTCCAAGCAGGGGTCAACAAAGTCGCTGTTTATCCGAACTACGGGTACATGCCAATGTGGCATTATCTTCCTCCATCTACCCGTGATACATCCCATGATCATGAGCTTAGGCCTCCTGCTGCATAA 672 0.4375 MDFDSLDDFFDFDDFIHHSPPPPSDFLWSNPSVSSEIGFSAGGSGGGGSDVCQEKTKKRRHASSCCKAGTKAGREKLRRERLNERFCDLSVVLEPGRPAKADKMAILDDAIRVLKQLKTEAEELKQTNEKLLEEIKCSKAEKNELREEKLVLKVDKERIERQLKDLPIQPAPAGYMPPNLAPFQAGVNKVAVYPNYGYMPMWHYLPPSTRDTSHDHELRPPAA* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g2341 223 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 66 117 IPR011598 GO:0046983
Amo09g2341 223 Pfam Helix-loop-helix DNA-binding domain 70 118 IPR011598 GO:0046983
Amo09g2341 223 Coils Coil 107 162 - -
Amo09g2341 223 MobiDBLite consensus disorder prediction 38 61 - -
Amo09g2341 223 Gene3D - 70 150 IPR036638 GO:0046983
Amo09g2341 223 PANTHER TRANSCRIPTION FACTOR BHLH104 9 223 - -
Amo09g2341 223 SMART finulus 72 123 IPR011598 GO:0046983
Amo09g2341 223 CDD bHLH_AtILR3_like 71 146 - -
Amo09g2341 223 PANTHER BHLH TRANSCRIPTION FACTOR 9 223 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Amo09g2341 223 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 74 142 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g2341 Amo-Chr9 96836613 96839847 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g2341 43 223 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G14410 62.234 9.46e-69 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo09g2341 HLH 6.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g2341 - - aip:107617845 378.252