Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g2278 GATTTAGGTGGAAGACTATTGACTGTTAACAAGGCTTTTCCAGGAGGAGAGCGACCTGAATGCCCACCCCGTTCATTCGAACAGGCTTTTAGAATCTATGTTGGTAACTTGTCTTGGGATGTTGACAATGGTTGCCTGGAGCAGATTTTCAGCGAACGAAAGACTGAACAATCATGCGGCTTTGCTTTTGTCACAATGACCGATGATATTGAAATGAACAACGCAATTGCTGCTCTTGATGGCCAGAGTTTAGATGGAAGGGAAATAAGAGTGAATGTTGCTGAGGACATACCCAGATGCTCTTTTGAGTATTAG 315 0.4349 DLGGRLLTVNKAFPGGERPECPPRSFEQAFRIYVGNLSWDVDNGCLEQIFSERKTEQSCGFAFVTMTDDIEMNNAIAALDGQSLDGREIRVNVAEDIPRCSFEY* 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g2278 104 Gene3D - 16 100 IPR012677 -
Amo09g2278 104 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 30 96 IPR000504 GO:0003723
Amo09g2278 104 PANTHER RIBONUCLEOPROTEIN 1 100 - -
Amo09g2278 104 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 32 90 IPR000504 GO:0003723
Amo09g2278 104 SMART rrm1_1 31 92 IPR000504 GO:0003723
Amo09g2278 104 PANTHER OS02G0815200 PROTEIN 1 100 - -
Amo09g2278 104 SUPERFAMILY RNA-binding domain, RBD 22 96 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g2278 Amo-Chr9 93956890 93957590 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g2278 2 95 Eukaryotic Initiation Factors Gene Family AT3G16380 32.456 6.64e-06 41.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g2278 - - ahf:112778713 189.119