Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g2221 ATGGCAAACCACACTATTATATTGAAAAAGACTACAATTCTACCATTTTTAACTTGCAAGATTTGTGATGAATTGCTGGAGGATGCTACTGCTATTGTTGAATGTCTTCATTTATTTTGCAAGAAGTGCATCCATCACAAAATTATTGAAGAGGAATTAGAACATTGTCCAGTGTGCGATCTAAATTTGGGACCTAAACCTCTCGAGAAATTGAGGCATGACGAAAGTATGCAATCAATAGGGAACACAATATTTCCTCCAAGAAAAAGAAATATTGTTAATAAAGTAGATGATGATGTTGCCAATGCTGAGAAGAATGAGTTATTAGGTGACCTTGGCAGAATTTTGTTTGAAGATCCTGAGAATGAAAAAGATGTGGCGTTAAAAGATTTGCCATATACTTCAAAAGAACATGTAGAGAATATCAAAGAGAGTTTGCTACCTTCTGAAAAGAGTCATTGCATGGAAAACAAAAATGTTAAGGGTAAAAGTATTTGTCTTGATAATGTGGAAGAATACAATACTGATGAAATTTTACAAATAGAAGATAATAACAATGGCTCTCAAGTTGAGATCACATGTTTGGGACACCAAATATCCACTAAAATGGAATTGAAAAAATTGGCTAAGTTGTGGTTTAACATGTCATTCAAAGGAAAGTCAAAGACAAAGCCATCACCAAATGATTATATTGCAATCATAGGCTATGGTCGTGGTGTCTCACAATCATGA 732 0.3388 MANHTIILKKTTILPFLTCKICDELLEDATAIVECLHLFCKKCIHHKIIEEELEHCPVCDLNLGPKPLEKLRHDESMQSIGNTIFPPRKRNIVNKVDDDVANAEKNELLGDLGRILFEDPENEKDVALKDLPYTSKEHVENIKESLLPSEKSHCMENKNVKGKSICLDNVEEYNTDEILQIEDNNNGSQVEITCLGHQISTKMELKKLAKLWFNMSFKGKSKTKPSPNDYIAIIGYGRGVSQS* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g2221 243 SMART ring_2 19 59 IPR001841 -
Amo09g2221 243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 109 IPR013083 -
Amo09g2221 243 ProSiteProfiles Zinc finger RING-type profile. 19 60 IPR001841 -
Amo09g2221 243 Pfam Zinc finger, C3HC4 type (RING finger) 19 59 - -
Amo09g2221 243 SUPERFAMILY RING/U-box 13 73 - -
Amo09g2221 243 ProSitePatterns Zinc finger RING-type signature. 35 44 IPR017907 -
Amo09g2221 243 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 8 95 IPR044807 GO:0004842
Amo09g2221 243 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 184 238 IPR044807 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g2221 Amo-Chr9 92205216 92214255 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g2221 8 90 C3H Transcription Factor Family AT2G30580 51.807 2.05e-26 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g2221 K16277 - ahf:114925965 357.066