Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g2218 ATGATTCTTAAAGCTGAAACCTTGTCATGTACTCCAAAGAAAGGGCAAAGTCATCAAGTTCAATGTTGTGGAAGAATGAGAGTTATTAGGAATTGGATTGTAAGTAAGAAGAGAAAGTTTCTTGGGATTGAGGAGAGATTGGAGAAGATGATCAATTGCATGCGTTCTGGGGAACAGGTTGCTGTTGATGAGATTGGTGGTTATTCATCAGAGTCACTTGCAACAAGGGACTATTCAGCTACAGCGAGTGGCTATTCATCTAGGCCTGGTGCTGCTGAATTTGATCCAAAGTTGGATAATAGCAACATTGAAGAAGCAGAGTCCACACTTCGTGAAAGTGGTTACTTGAACTATGAGGAAGCTAGAGCTTTACTAGGAAGGCTTGAATATCAGAAGGGTAATTTTGAAGCTGCACTTCATGTATTTGAAGGAATAGACATTGCTGCTGTTGCTCCAAAGATGAAAATTTCTATATCTAGAAGATGTGAACGGAATATGAATAGACGCCGTTCGTTGAGTGATGCAGCGCCTCCTATGTCCATTCATGCTGTTAGTCTACTTCTTGAAGCTGTTTTGCTCAAGGCAAAGTCATTGCAGATTCTTGGAAGGTTTCAAGAAGCTGCTAGATCATGCAAGACTATTTTGGACACTGTTGAATCTGCATTACCTGAAGGATGGCCTGAGAACTTTGATTTAGACAGAAAGTTACAAGAGACTATAAGAAATGCTGTAGAACTACTTCCAGAGCTATGGAACCTTGCCGGCTCTCATCAACATGTCATATCATCATTTAGGAGGGCCTTGCTTTATCCATGGAATCTTGACATTGAAACAACTTCAAGAATTCAAAAGGAATTTGCTATGTTTCTTCTGTATAGCGGCTGTGAAGCGAGTCCTCCTTCGCTTCGCTCTCAATTGGACGGTTCCTTTGTCCCAAGAAACAATATAGAAGAAGCTGTTCTCTTGCTTCTTATTCTGCTGAGAAATTCTGCTATAGGAAGCATTGAATGGGACCCTTCAGTAGTTGATCATCTTTCTTTTGCTCTAACTGTTTCCGGGGAGTTCAAGACACTGGCTCAACAGGTTGAGGAATTGCTTCCGGAAACCATGGAGAGGAAAGAAAGACATTATATTCTAGCACTTTGTTACTTTGGTGAAGGTGAGCACATGATTGCTTTGGATCTTTTGAGGAACTCTTTGAATGATAGAGAGAACTCGGAGTGCGAACAGGAGCTGCTTCTAGCTTCAAAAATTTGTGCAGATAACATGGTTTGTGTTGAGGATGGAATCAAATATTCTTGCAAAGCAATTTCTCAGTTGGATGGAAAGTGCATGCAAGTGGTAGCAATTGCATATTGCTTACTAGGTGTTCTGCTCTCATCGAAATCAAGGTTGATAGCTTCTGATTCAGAGAAAGTTTTAATGCAATCCGAAGCACTGAGGGCTCTGAAAACGGCAGAGAGAACGATGAGTGAGAGTGATCCTTACATAGTCCTTCATCTTTGTCTAGAATACGCCGAGCAGCGGAACTTGAGCATTGCTTTTTGTCATGCAAAGGAACTGGTTAAGCTTGAGGGTGGATCTAGTGTTGCTGCATATGTATTACTTGCAAGGATTTTATCAGCTCAAAAGAATTTTGTGGATGCAGAGTTGGTTATTGATGCTGCCATAGATCAAAGTGGGAAATGGGATCAAGGAGAGTTGTTGAGAACCAAAGCGAAACTCCGGATTGCACAGGGAAGATTAAGGAGTGCAGTGGAGACATATACTTTCCTCCTTGCTGTGCTTCAAGTCCAAAACAAAAGTTTGGGCACTGCAAATAAGGTTATGAAGAGTAAGAGAAACCGCAACAGAAATCTGGAGATGGAAATATGGCATGATTTGGCCAACTTGTACATTGCTTTATCACAGTGGCGAGATGCTGAAGTTTGTCTTGCAAAGTCTAAGGCTATTAATCCTTATTCTGCTTCTAGATGGCACTCCACAGGTTTACTTTTCAAGGCCAGAGATCAGCAGCAAGAAGCATTGAATGCATTTAGGAAAGCACTAGACATCGAACCAAACCATGTGCCAAGTTTGATATCAACAGCATGTGTTCTGAGACAGCTTGGTGGCCAATCATCTTCAATTGTGAGAAGCCTTCTGAGTGATGCACTAAGGCTTGACAGAACAAACCCAAATGCTTGGTACAATCTTGGACTGCTCTACAAACATGATTTGGGCACATCTACATTGGAAGCTGCTGAGTGCTTTGAGGCTGCTGCTCATCTTGAAGAAACTTCTCCCATTGAACCCTTTAGATAG 2304 0.4167 MILKAETLSCTPKKGQSHQVQCCGRMRVIRNWIVSKKRKFLGIEERLEKMINCMRSGEQVAVDEIGGYSSESLATRDYSATASGYSSRPGAAEFDPKLDNSNIEEAESTLRESGYLNYEEARALLGRLEYQKGNFEAALHVFEGIDIAAVAPKMKISISRRCERNMNRRRSLSDAAPPMSIHAVSLLLEAVLLKAKSLQILGRFQEAARSCKTILDTVESALPEGWPENFDLDRKLQETIRNAVELLPELWNLAGSHQHVISSFRRALLYPWNLDIETTSRIQKEFAMFLLYSGCEASPPSLRSQLDGSFVPRNNIEEAVLLLLILLRNSAIGSIEWDPSVVDHLSFALTVSGEFKTLAQQVEELLPETMERKERHYILALCYFGEGEHMIALDLLRNSLNDRENSECEQELLLASKICADNMVCVEDGIKYSCKAISQLDGKCMQVVAIAYCLLGVLLSSKSRLIASDSEKVLMQSEALRALKTAERTMSESDPYIVLHLCLEYAEQRNLSIAFCHAKELVKLEGGSSVAAYVLLARILSAQKNFVDAELVIDAAIDQSGKWDQGELLRTKAKLRIAQGRLRSAVETYTFLLAVLQVQNKSLGTANKVMKSKRNRNRNLEMEIWHDLANLYIALSQWRDAEVCLAKSKAINPYSASRWHSTGLLFKARDQQQEALNAFRKALDIEPNHVPSLISTACVLRQLGGQSSSIVRSLLSDALRLDRTNPNAWYNLGLLYKHDLGTSTLEAAECFEAAAHLEETSPIEPFR* 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g2218 767 ProSiteProfiles TPR repeat profile. 656 689 IPR019734 GO:0005515
Amo09g2218 767 SUPERFAMILY TPR-like 567 737 IPR011990 GO:0005515
Amo09g2218 767 SUPERFAMILY TPR-like 374 594 IPR011990 GO:0005515
Amo09g2218 767 SMART tpr_5 622 655 IPR019734 GO:0005515
Amo09g2218 767 SMART tpr_5 726 761 IPR019734 GO:0005515
Amo09g2218 767 SMART tpr_5 530 563 IPR019734 GO:0005515
Amo09g2218 767 SMART tpr_5 656 689 IPR019734 GO:0005515
Amo09g2218 767 SMART tpr_5 188 221 IPR019734 GO:0005515
Amo09g2218 767 PANTHER OS10G0471400 PROTEIN 42 767 - -
Amo09g2218 767 Gene3D Tetratricopeptide repeat domain 91 602 IPR011990 GO:0005515
Amo09g2218 767 Gene3D Tetratricopeptide repeat domain 603 764 IPR011990 GO:0005515
Amo09g2218 767 PANTHER PROTEIN NPG1 42 767 IPR043376 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g2218 Amo-Chr9 92157789 92161847 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g2218 51 767 Calmodulin-binding Proteins AT4G28600 52.198 0.0 689
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g2218 K21843 - gmx:100789469 1116.29