Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g2210 ATGCGGTTCAGGACATGCTGCAAGAGCCGTGGCTTCGGTTGCCAAACCCATGGGAAGAGCACTTGGGTTCCCACTTCCAAGCGTCGCGAGAGGCAGCAACAACTCACCTCTATGCAACAACAGCTTCTTGCTGCTGATGTTCCCAAGCGCCAAAGAGATCATGCCTGGTGGCTGGCAGCAGCAGAGGAGGAAGACGAAGGATGA 204 0.5588 MRFRTCCKSRGFGCQTHGKSTWVPTSKRRERQQQLTSMQQQLLAADVPKRQRDHAWWLAAAEEEDEG* 68
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g2210 67 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 55 IPR007818 GO:0003700|GO:0006355
Amo09g2210 67 Pfam Domain of unknown function (DUF702) 1 49 - -
Amo09g2210 67 PANTHER PROTEIN SHI RELATED SEQUENCE 7 1 55 - -
Amo09g2210 67 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 1 28 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g2210 Amo-Chr9 91811327 91811530 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g2210 1 53 C2H2 Transcription Factor Family AT5G66350 70.370 5.54e-20 79.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Amo09g2210 DUF702 7.9e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g2210 - - adu:107462205 93.5893