Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g2162 ATGGATCACGTTATCGGTGGAAAATTCAAGCTTGGGAGAAAGATTGGAAGTGGGTCATTTGGAGAGCTCTACTTGGGTGTTAATGTGCAAAGTGGAGAGGAAGTTGCTGTCAAGCTGGAATCTGTGAAGACCAAACATCCACAACTTCATTATGAGTCAAAATTATATATGCTTCTTCAAGGCGGAACTGGTATACCCCATTTAAAATGGTTTGGAGTTGAGGGTGACTACAATGTCATGGTGATTGACCTTCTTGGACCAAGTCTGGAAGACTTATTTAACTATTGCAACAGGAAATTTTCGCTGAAAACAGTTCTGATGCTTGCAGATCAACTCCTAAACAGAGTTGAGTACATGCACTCCCGGGGTTTTCTGCACCGTGATATAAAACCCGACAACTTTTTAATGGGTTTGGGCCGCAAGGCAAATCAGGTTTACATAATTGATTATGGTCTTGCAAAAAAGTATCGTGATCTTCAAACCCATAAGCATATACCATACAGGGAAAACAAAAACCTTACTGGAACTGCACGCTATGCAAGTGTTAATACTCATCTTGGAGTTGAACAAAGCAGAAGAGATGATCTAGAATCTCTTGGTTATGTGCTCATGTACTTCTTGAGAGGAAGTCTCCCTTGGCAAGGCTTGAAAGCTGGGACTAAAAAGCAGAAGTATGACAAGATAAGTGAAAAGAAGATGCTTACTCCAATAGAGGTCTTGTGCAAATCACACCCACTGGAATTCACATCCTACTTTCACTACTGCCGGTCATTGCGTTTTGAAGATAAGCCTGATTATTCATATCTCAAGAGACTCTTCCGTGACCTATTCATACGAGAAGGTTATCAATTTGACTATGTATTTGACTGGACTATATTGAAGTATCCACAAATTGGATCCAGTTCTAGAGCTCGACTAACCGGGAAGCCAGTCGGAAACCCAGGACTATCAGGAGATAGGTTAGATCGACCTTCAGGTGGGCCAGAGATTCGGGAAAGATTATCAGGTGCTGTTGAGGCATTTGCAAGAAGGAATGGCTCTGGACTAAATCTGCATAGGTCTTCAGATGATGTGCCATCTTCCAAAGATGTGCAAGCTGATTCGGAGAGAACTCGTAGCTCTTCTCGCAATGGCAGTGCCTCAAAAAGGCCTGTTGTTTTGAGCAGTCGGCCGAGTTCTTCTGGTGAGCCTAGCGAGAACCGTTCAAGTAGGCTGCTTGCAAGCAGCAGCCGTCTATCTACAACTCACAGGATTCAACCAGGTCTGGAGTCCAAAACATCATTCACCCGTGCATCCGGGACAAGGGGAGGCCGTGATGACACACTCAGGAGCTTTGAACTCCTGTCAATTGGTACGGGAAAAAGGAAATGA 1371 0.4384 MDHVIGGKFKLGRKIGSGSFGELYLGVNVQSGEEVAVKLESVKTKHPQLHYESKLYMLLQGGTGIPHLKWFGVEGDYNVMVIDLLGPSLEDLFNYCNRKFSLKTVLMLADQLLNRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAKKYRDLQTHKHIPYRENKNLTGTARYASVNTHLGVEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISEKKMLTPIEVLCKSHPLEFTSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTILKYPQIGSSSRARLTGKPVGNPGLSGDRLDRPSGGPEIRERLSGAVEAFARRNGSGLNLHRSSDDVPSSKDVQADSERTRSSSRNGSASKRPVVLSSRPSSSGEPSENRSSRLLASSSRLSTTHRIQPGLESKTSFTRASGTRGGRDDTLRSFELLSIGTGKRK* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g2162 456 PANTHER CASEIN KINASE-RELATED 1 443 - -
Amo09g2162 456 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Amo09g2162 456 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo09g2162 456 SMART serkin_6 9 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo09g2162 456 MobiDBLite consensus disorder prediction 356 370 - -
Amo09g2162 456 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo09g2162 456 PANTHER CASEIN KINASE I-LIKE PROTEIN 1 443 - -
Amo09g2162 456 MobiDBLite consensus disorder prediction 345 441 - -
Amo09g2162 456 MobiDBLite consensus disorder prediction 371 434 - -
Amo09g2162 456 MobiDBLite consensus disorder prediction 303 330 - -
Amo09g2162 456 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Amo09g2162 456 Gene3D Transferase(Phosphotransferase) domain 1 1 311 - -
Amo09g2162 456 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Amo09g2162 456 CDD STKc_CK1_delta_epsilon 8 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g2162 Amo-Chr9 90415030 90420240 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g2162 8 213 MAP Kinase Kinase Kinase AT3G06030 26.389 7.26e-15 75.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Amo09g2162 Pkinase 7.3e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g2162 K08960 - gmx:100804897 802.742