Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g2150 ATGGGGCAAGGGCAATCCAAGAGCGAATTGCTCTATCAGCAGGTCAGTTATGGGAACATAGAAGGAATCAAAGCCCTTCACAGAGATGGTGCAGGCCTCGAGTGGATAGACAGAGAAGGAAAAACCCCCTTGATTGTTGCATGCATGAATCCTGAGCTTTATAATGTTGCCAAAACTTTGATAGAACTTGGAGCCAATGTCAATGCATACCGTCCAGGTCGTCATGCAGGGACTCCATTGCATCATGCTGCTAAAAGGGGGCTTGAAAGTATTGTTAAGTTACTTCTTTTGCATGGAGCAAATCCTTTGATCTTGAATGATGATTGTCAAACTGCTCTTGAGGTCGCCAGGGCCAAAGGACACAGCAATGTTGTTAGGGCAATTGAGAGTCATCTATGCTTGTTCTGTGGTTGGATGCGAGAATTTCATGGACCTGGCTTTCTAGAAGTAGTAGCTCCTCAGTTGGTATCTAGAAGAGTTTGGGTGGTTGTTTTACCAGTTGGCTCCCGCAATCCTACCAGACCTTACAAGTTGGAGCTTGCTTTATATTCTACTTTGCAGGATGGACAACCACGAACACTAATTCCTCTGTGGAGGGCCAATTTAGAAGAACCAAAGCTTCACCAGTCTGACCCATCCGTGACAATTGCTGATATGACTTCCCGAACACGGGTTAAACTTGCACCTGCAAAAGAGAATGACAGGCACCAACTTGCATTGTTTTCTAATGCTTGCAAAGGGATTCCACAGGCAAGTCCAGCATTTTTGCAAAGTAATGTGCCTCCGGCCACAGCACCACCATCTACAGAAGGCGAAGGCGAAGACGCAGAGCTGGCTATGGCCATCAGTGCATCTCTTCAGCAGGCCATTCAGGAGAGACCACCTTTTCCAGCTGCCCAACCAAACTTCGAAGCAAGCTCTTCAAGCAGCGGTGCAAACAGAAGCAAACTTGGTTTTCTAGGCACCCAAAATCCAAACACAAGTGAAAGCGAGCCTGTACAGGAAGTCCATGAAAATGCCTCTGCTGGACATGCTGCCAGCAGTCTTGATTTCGATCCATCAGCTCCACCAGCCCCTCCAGCTGCCGATGATGATATTCCGGTGGACGGCCCCATTCAATACCCTTCAATTGACATAAGCCCCGTGGACATGTCATCGCCAGTTGTTGAGAACCTACCGAAAGATGAAGAAGGAAAACATGCCGGAGGAAGCGGCTCATCATGTGTGATATGTCTGGATGCACCGGCAGAGGGGGCATGCATACCATGTGGTCACGTGGCCGGATGCATGTCGTGCTTGAATGAGGTCAAGACAAAGAAATGGGGTTGCCCGGTGTGTCGAGCGAAAATAGACCAGGTCATAAAGCTGTACCATGTTTGA 1380 0.4826 MGQGQSKSELLYQQVSYGNIEGIKALHRDGAGLEWIDREGKTPLIVACMNPELYNVAKTLIELGANVNAYRPGRHAGTPLHHAAKRGLESIVKLLLLHGANPLILNDDCQTALEVARAKGHSNVVRAIESHLCLFCGWMREFHGPGFLEVVAPQLVSRRVWVVVLPVGSRNPTRPYKLELALYSTLQDGQPRTLIPLWRANLEEPKLHQSDPSVTIADMTSRTRVKLAPAKENDRHQLALFSNACKGIPQASPAFLQSNVPPATAPPSTEGEGEDAELAMAISASLQQAIQERPPFPAAQPNFEASSSSSGANRSKLGFLGTQNPNTSESEPVQEVHENASAGHAASSLDFDPSAPPAPPAADDDIPVDGPIQYPSIDISPVDMSSPVVENLPKDEEGKHAGGSGSSCVICLDAPAEGACIPCGHVAGCMSCLNEVKTKKWGCPVCRAKIDQVIKLYHV* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g2150 459 MobiDBLite consensus disorder prediction 253 274 - -
Amo09g2150 459 Pfam Zinc finger, C3HC4 type (RING finger) 406 453 - -
Amo09g2150 459 SMART ANK_2a 39 69 IPR002110 GO:0005515
Amo09g2150 459 SMART ANK_2a 75 104 IPR002110 GO:0005515
Amo09g2150 459 SMART ring_2 408 446 IPR001841 -
Amo09g2150 459 SUPERFAMILY RING/U-box 407 453 - -
Amo09g2150 459 Gene3D - 79 132 IPR036770 -
Amo09g2150 459 MobiDBLite consensus disorder prediction 296 370 - -
Amo09g2150 459 SUPERFAMILY Ankyrin repeat 9 133 IPR036770 -
Amo09g2150 459 ProSiteProfiles Ankyrin repeat region circular profile. 75 101 - -
Amo09g2150 459 PANTHER ROLLING PEBBLES, ISOFORM B 1 459 - -
Amo09g2150 459 PANTHER UBIQUITIN-PROTEIN LIGASE XBAT35, PUTATIVE-RELATED 1 459 - -
Amo09g2150 459 ProSiteProfiles Zinc finger RING-type profile. 408 447 IPR001841 -
Amo09g2150 459 ProSiteProfiles Ankyrin repeat profile. 75 107 IPR002110 GO:0005515
Amo09g2150 459 Pfam Ankyrin repeats (many copies) 60 116 IPR002110 GO:0005515
Amo09g2150 459 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 388 458 IPR013083 -
Amo09g2150 459 Gene3D - 3 78 IPR036770 -
Amo09g2150 459 ProSiteProfiles Ankyrin repeat profile. 39 72 IPR002110 GO:0005515
Amo09g2150 459 MobiDBLite consensus disorder prediction 301 335 - -
Amo09g2150 459 ProSiteProfiles Ankyrin repeat region circular profile. 39 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g2150 Amo-Chr9 90056124 90061436 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g2150 398 456 C3H Transcription Factor Family AT3G06140 33.898 1.41e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g2150 - - gmx:100805974 689.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g2493 19 117871355 117876720 Amo09g2150 09 90056124 90061436 hybridization