Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g2108 ATGGTGAGAGCTCCTTGTTGTGAAAAGATGGGATTGAAGAAGGGTCCATGGACGGCAGAGGAAGATCAAATCCTCATTTCTTACATCCAAAAACATGGCCATGGCAATTGGCGTGCCCTCCCAAAGCAAGCAGGGTTGCTAAGGTGTGGAAAGAGCTGCAGATTAAGGTGGATAAATTATCTGAGGCCTGATATCAAGAGAGGGAATTTCACCATTGAAGAAGAAGAAACCATCATCAAGCTTCATGAAATGCTTGGCAACAGGTGGTCGGCAATTGCGGCAAAATTACCCGGAAGAACAGACAACGAAATCAAGAATGTGTGGCACACACATTTGAAGAAGAGGCTCATCAAACCAAACCAAATGAATTCATCATCATCAGATACCAAAAGGGTATCTAATAAGTCAAAGATCAAACGTTCTGATTCAAATTCAAGCACCATAACTGTTCAATCATCGGAACCAGCAAGTCTCAATAGTAATTTCCCTGAAGTGGACACAACTTCAGCATCATGCACCACCACTACAACAACAACCTCTAGTGAATTCTCATCAGCCACAAATACTGGTGAAAGAAAGATCATGAACATGATGAACATCAAGAATGAGGAGCTAGAAGATTCTTTGGAGAACATAATTGATGAAAGCTTATGGACAGAGGCAGGAATTGATGATGAAACCACCAACATGACAATCTCAAATAATGAGTTGCCCTCACTTCAATATTATGACCCAGTATTTAATAATTCGGAGGAGAATTTATGCTTCCAACCAAGTGCAAACTTTGAGGATGATGGCATGGATTTTTGGTATGACATATTCATTAGAACTGGGGAGTCAATAGAATTGCCAGAGTTCTGA 861 0.4077 MVRAPCCEKMGLKKGPWTAEEDQILISYIQKHGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTIEEEETIIKLHEMLGNRWSAIAAKLPGRTDNEIKNVWHTHLKKRLIKPNQMNSSSSDTKRVSNKSKIKRSDSNSSTITVQSSEPASLNSNFPEVDTTSASCTTTTTTTSSEFSSATNTGERKIMNMMNIKNEELEDSLENIIDESLWTEAGIDDETTNMTISNNELPSLQYYDPVFNNSEENLCFQPSANFEDDGMDFWYDIFIRTGESIELPEF* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g2108 286 MobiDBLite consensus disorder prediction 117 131 - -
Amo09g2108 286 CDD SANT 69 112 IPR001005 -
Amo09g2108 286 CDD SANT 16 61 IPR001005 -
Amo09g2108 286 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Amo09g2108 286 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Amo09g2108 286 Coils Coil 195 215 - -
Amo09g2108 286 Gene3D - 13 66 - -
Amo09g2108 286 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 278 - -
Amo09g2108 286 PANTHER MYB15 1 278 - -
Amo09g2108 286 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Amo09g2108 286 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Amo09g2108 286 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Amo09g2108 286 MobiDBLite consensus disorder prediction 139 188 - -
Amo09g2108 286 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Amo09g2108 286 Gene3D - 69 145 - -
Amo09g2108 286 MobiDBLite consensus disorder prediction 116 188 - -
Amo09g2108 286 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Amo09g2108 286 SMART sant 66 114 IPR001005 -
Amo09g2108 286 SMART sant 13 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g2108 Amo-Chr9 88730358 88732957 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g2108 1 286 MYB Transcription Factor Family AT2G31180 47.751 4.29e-81 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo09g2108 Myb_DNA-binding 1.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g2108 K09422 - gmx:100807569 341.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g2485 19 117537943 117540625 Amo09g2108 09 88730358 88732957 hybridization