Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g2104 ATGGTGAGAGCTCCTTGTTGTGAAAAGATGGGATTGAAGAAGGGTCCATGGACGGCAGAGGAAGATCAAATCCTCATTTCTTACATCCAAAAACATGGCCATGGCAATTGGCGTGCCCTCCCAAAGCAAGCAGGGCTGTTAAGGTGTGGAAAGAGCTGCAGATTAAGGTGGATAAATTATCTGAGGCCTGATATCAAGAGAGGGAATTTCACCATTGAAGAAGAAGAAACCATCATCAAGCTTCATGAAATGCTTGGCAACAGGTGGTCGGCAATTGCGGCAAAATTACCCGGAAGAACAGACAACGAAATCAAGAATGTGTGGCACACACATTTGAAGAAGAGGCTCATGAAACCAAACCAAATGAATCATCATCATCATCAGATCCCAAAAGGCACCATAACTGTTCAATCATCGGAACCAGCAAGTCTCAATAGTAATTTCCCTGAAATGGACACAACTTCAGCATCATGCACCACCACTACAACAACAACCTCTAGTGAATTCTCATCAGCCACAAATATTGGTGAAAGCAAGAACGTGAACATGATGAACATCAAGAATGAGGAGCTAGGAGATTCATTGGAGAACATAATTGATGAAAGCTTATGGACAGAGGCAGGAATTGATGATGAAACCACCAACATGACAATCTCAAATAATGAGTTGCCCTCACTTCAATATTATGACCCAGTATTTAATAATTCTGAGGAGAATTTAAGCTTCCAACCAAGTACAAACTTTGAGGATGATGGCATGGATTTTTGGTATGACATATTCATTAGAACTGGGGAGTCAATAGAATTGCCAGAGTTCTGA 819 0.4139 MVRAPCCEKMGLKKGPWTAEEDQILISYIQKHGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTIEEEETIIKLHEMLGNRWSAIAAKLPGRTDNEIKNVWHTHLKKRLMKPNQMNHHHHQIPKGTITVQSSEPASLNSNFPEMDTTSASCTTTTTTTSSEFSSATNIGESKNVNMMNIKNEELGDSLENIIDESLWTEAGIDDETTNMTISNNELPSLQYYDPVFNNSEENLSFQPSTNFEDDGMDFWYDIFIRTGESIELPEF* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g2104 272 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 264 - -
Amo09g2104 272 CDD SANT 69 112 IPR001005 -
Amo09g2104 272 CDD SANT 16 61 IPR001005 -
Amo09g2104 272 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Amo09g2104 272 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Amo09g2104 272 PANTHER TRANSCRIPTION FACTOR MYB30-LIKE 1 264 - -
Amo09g2104 272 Gene3D - 13 66 - -
Amo09g2104 272 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Amo09g2104 272 Gene3D - 69 135 - -
Amo09g2104 272 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Amo09g2104 272 MobiDBLite consensus disorder prediction 146 170 - -
Amo09g2104 272 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Amo09g2104 272 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Amo09g2104 272 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Amo09g2104 272 SMART sant 66 114 IPR001005 -
Amo09g2104 272 SMART sant 13 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g2104 Amo-Chr9 88616140 88618405 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g2104 1 272 MYB Transcription Factor Family AT2G31180 48.571 1.45e-81 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo09g2104 Myb_DNA-binding 1.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g2104 K09422 - gmx:100807569 329.717