Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g2051 ATGACTTGGAAAGAATTGAACGAGGAGCCGTATGAGGGTGACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCTGGATTTGAAATCACTGCTTATATACCCGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGTCGTTCTAGTGCGTTAATTCTGTGGAAAGCCGTATTTGATGAAAGTCGTATGTACGGCTTGGGGGGAGATCTTTCATATCTTTCGAGATCCACCCTACAATATGGGGCCAAAAAGCCAAAATAA 408 0.4314 MTWKELNEEPYEGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSALILWKAVFDESRMYGLGGDLSYLSRSTLQYGAKKPK* 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g2051 135 PRINTS Ribosomal protein S12 signature 9 24 IPR006032 GO:0003735|GO:0005840|GO:0006412
Amo09g2051 135 PRINTS Ribosomal protein S12 signature 59 76 IPR006032 GO:0003735|GO:0005840|GO:0006412
Amo09g2051 135 PRINTS Ribosomal protein S12 signature 40 59 IPR006032 GO:0003735|GO:0005840|GO:0006412
Amo09g2051 135 PRINTS Ribosomal protein S12 signature 76 92 IPR006032 GO:0003735|GO:0005840|GO:0006412
Amo09g2051 135 PRINTS Ribosomal protein S12 signature 24 39 IPR006032 GO:0003735|GO:0005840|GO:0006412
Amo09g2051 135 Pfam Ribosomal protein S12/S23 6 95 IPR006032 GO:0003735|GO:0005840|GO:0006412
Amo09g2051 135 Gene3D - 2 104 IPR012340 -
Amo09g2051 135 PANTHER 30S RIBOSOMAL PROTEIN S12-B 12 100 - -
Amo09g2051 135 CDD Ribosomal_S12 21 92 IPR005679 GO:0003735|GO:0006412|GO:0015935
Amo09g2051 135 TIGRFAM rpsL_bact: ribosomal protein uS12 5 98 IPR005679 GO:0003735|GO:0006412|GO:0015935
Amo09g2051 135 SUPERFAMILY Nucleic acid-binding proteins 4 97 IPR012340 -
Amo09g2051 135 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 12 100 IPR006032 GO:0003735|GO:0005840|GO:0006412
Amo09g2051 135 ProSitePatterns Ribosomal protein S12 signature. 25 32 IPR006032 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g2051 Amo-Chr9 85899891 85900789 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g2051 22 81 Cytoplasmic Ribosomal Protein Gene Family AT5G02960 44.118 8.41e-09 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g2051 K02950 - ghi:121211253 177.563