Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g2035 ATGAAGTTGAACAAGATACAATGTACTTTGAAGAAGGAGGTCATTAATCAATTTCGAGAAATTCTCAGAGAAGGAGAGCTGTATTCTATATCTCGATTCACGGTAGTTCCAAATATTGGTGCAGCAAAAGTTGTAAAGCATCGATATAAGTTGCTTTTTCAGTTTGACACGGAGGTTATTCGAATTTTCGATGTTGAGTTTCCAGAGGCTTCATATTCATTAGAGACTGTTGAAAGTGTTGTTCAGATGGGACAATATTCAGTATACTTGATCGATGTCATGGGTTTTCTGATAAGTGTTCGTGACTATTCTAATATTGAACTTGACGATGAGAAAAAATTTAAATTAGTTCTCATCCAGTTATATACAAATGGCTCTTATCTCACCTGTAATTTATTTGAAAATTTTTTAACAAAGATACGGTTGGCTCTTATGAATGTTGTCTCGCAACCGCCAATCATTTTACTCCAATCTGTCAAGGTCAAGATTTATGAAGGAAAGATTGTAGTTCAGAATGTAATAGATTGTAGCAAAATCATGATCAATCCTGATATTTCAGAGGCTGTATGCTTTATTACTAGATTGGATCCTTCGGAGTCATATTTCATTAACTCTATCACCCTTGGTAATGAATTTATTATTGCTGATGTTGATGATGATTTTGTCAATCTCTCTATGAATAGGAGTATTAAGAAATTAAGAGAAAATGATGCGGATGGTTTCTTCAATGTTGTTGCTAAGATTAAAAGTATATGCAACAATTTTGATTGGTGGTACTACTCATGTGTTTGTGGTTATCCTTTCGAGATTTTTAGAAGTCATTTCAGTTGTTCCGAATGTGGAAGGAAAATAAAGAGTGCTGTGAAGAAGTACAGAGTTTTAGTAGATGTTGAGAATGCTACTGGAAGTGCTAGATTTGTTTTGTATGATCGTTCCGCAGCGCTCTTATTCAGGAAAAAGCTCATTGAAGTTCTTCGGGATCTTGATGTTGAGCAGTCGGTATAA 1005 0.3463 MKLNKIQCTLKKEVINQFREILREGELYSISRFTVVPNIGAAKVVKHRYKLLFQFDTEVIRIFDVEFPEASYSLETVESVVQMGQYSVYLIDVMGFLISVRDYSNIELDDEKKFKLVLIQLYTNGSYLTCNLFENFLTKIRLALMNVVSQPPIILLQSVKVKIYEGKIVVQNVIDCSKIMINPDISEAVCFITRLDPSESYFINSITLGNEFIIADVDDDFVNLSMNRSIKKLRENDADGFFNVVAKIKSICNNFDWWYYSCVCGYPFEIFRSHFSCSECGRKIKSAVKKYRVLVDVENATGSARFVLYDRSAALLFRKKLIEVLRDLDVEQSV* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g2035 334 CDD RPA1_DBD_B_like 92 196 - -
Amo09g2035 334 CDD RPA1_DBD_A_like 2 59 - -
Amo09g2035 334 Gene3D - 65 201 IPR012340 -
Amo09g2035 334 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 36 313 - -
Amo09g2035 334 SUPERFAMILY Nucleic acid-binding proteins 234 326 IPR012340 -
Amo09g2035 334 SUPERFAMILY Nucleic acid-binding proteins 5 65 IPR012340 -
Amo09g2035 334 PANTHER REPLICATION FACTOR A 1, RFA1 36 313 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Amo09g2035 334 SUPERFAMILY Nucleic acid-binding proteins 89 196 IPR012340 -
Amo09g2035 334 Gene3D - 219 333 IPR012340 -
Amo09g2035 334 Pfam Domain of unknown function DUF223 5 63 IPR003871 -
Amo09g2035 334 Gene3D - 2 64 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g2035 Amo-Chr9 84941945 84943907 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g2035 5 313 Core DNA Replication Machinery Family AT5G08020 24.149 1.26e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g2035 - - aip:107620782 387.882