Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g2021 ATGGTAGGACTTGAGATCATACCAATAGGCACAATTTTGGCAGTGCTAACCAACCAGGTCTTGAAAACGGCTCATGCAGCGGCCAATGTTCTTGTAGGCAAAGAAAGTTTCAAAATCCTCTCAAAACACCTCTTTGATATTGAGCCTGTTCTGAAGGAACTACAGCTTCAAGAGCTCAATGAATCTCAAGCTGCAAGGGCTGCTTTGGAATCACTAGAATCAGATGTCAAAAGGGCTAACAATTTGGTCGAAAAGTACAGGAACCGTGGCAGATTCTATCTTCTGGTTAAGTGCAGATACATAGTTGGGGAGGTTGAGCAAGTCACAAGAGATATTGGCAAGTCTCTGGCTGCACTTTCGCTTGCGAATACTGAAGTCCTAACAAGAATCTCTGATCAGGTTGATAGGCTGCAGAATGAGATGCAAAGAGTGGAGTTTGAGGCTTCGCGGTCGCAGCTTCAGATTGTTGAGAAGTTGGATTATGCACTTAGAGAACAGAAACTCGATCAGGCTTTCGCAAATGACATGCTTGAGGAAATAGCAAGAGCCGTTGGCGTGCCTGTGGAGCCTTCAGAGATAAGCAAAGAATTAGCCAGCATTAGGAAGGAGAAAGAAGAAGCTGCAAGCCGGAAAGAGCGAGCCGAGTACATTTTCTTGGAGCAGATCATTGAGTTACTCTCTAGAGCTGATGCAGCAAGGGACTATGAAGGAGTGAAGAAACAATACTTTGAAAGAGTTCAAGTCATAGAAAGGTATGATTCAAGGGAAAGATATATCTTACCACTCAATCCTTTCCTCTGCTCGATAACCGGCGTGGTTATGGTTGATCCTGTTAGCCTTTGTACTGGTACTACATGTGAGAGATCTGCCATTGAAGATTGGTTTCACAATGGGAACCGAACAGATCCAGAAACAAACGAGGTTCTTGAAGAAACTACCCTGAGGTCTAACATTCCACTAAGACAATCCATAGAAGAATGGAGAGAACTTAATTATTGTCTTGTTATAAGGTCTATCAAGGAAAATCTGATCACAAATTATGATGTGCATGAGTCTTTGAGCCTAATTCAGGCCCTTATGAGAGAAAATTCTATTAACAAGGATTGGATTTCTATTGGAGGGGTAACGGATGTTGTTATCTCTATCCTTGGAAACTCTAATTATAAAGAAGCCAAGTTGAAGATTCTGATTACTCTGAAAGATGTTGTAGAGGGACATGCAAGAAACAAGGAGAAGGTGGCTGAATCTCAAGGATGGGATCAGATTATTTGTTGCTTAGGGGGTGATTCTAGCACTTCAAAGGCAGCAATCGATCTGCTGTACGAGTTGCTTCAAGGGCGGTCCGGCTGGAACAAAAGCTTTTGCAAAAAACTCTCTCAGAATCAGAATGCAATTCCTTTCCTTGTCACCTTTCTAAAGGGATCAGACAACGATTCAGCCGAGGCAGCAGAAAAGATTTTGATGGAAGTTTTCAAAATAAATGAGGAAAGTATTACAACTGCTGCTAGATTTGGCTGGTATAAACCCCTCGTTGATCGCATGATTCAAGAACCAGATTCGAGACTAGGAATGGTGAAAGGCATAGTAAGCTTGGAGTTAAACCTGTTAGAGTTGAAAGAACTTGGTGAGGAAGGTGTTATACCTCCTCTTCTAGAAATGCTATGTGGAAGCATTGAATCAAAGGACTTGTCACTATCAGCACTGGTTAAACTAGCAGGATGTCCTCCAAACAAGAGAATAATCGCAGAATCTGGAGGTGTTCCTTTGATTCTAGATCTAACATTCTCAACGCGGATGAGGACATTCATTACTATCAAATGCTGCGAAATCCTGGAGAAGCTTTCCTTTGATGAAGATGGAATAGACTTGTTTGTTGACAGAGAAGGGAATCAACTTGAGTTAGATTCCATCATCACCAATTTGCTAGCATTGCAGCAGAGTTTCAACACTGGATACAATTTTCGCAAGCCTGCGCTGCGCGCTCTTTTAGGCATTTGCAAGTTTGAGACTGATTTAATTAAGAAGGCAATTCTTGCAGCCAATAGTGTCTCTCTAATTCTTCCACTTCTTGATGACTCTGATTCAGAAATCCGAGAAACTGCAATAAACTTGCTCTTTCTATTCTCCCAGCACGAGCCGGATGGAGTAGTTGAGTATCTCTTCAGGCCTAGAAGGCTAGAAGCCTTGATTGGTTTTCTTGAGAATGATGAGAATGACAATGTGAGGATGGCTGCGGCCGGATTACTTGCAAACCTGCCTAAATCAGAAAGAGAACTCACTATGAAGTTGATTGAATTAGGTGGACTTGATGCTATAATAAGCATATTGAGAACTGGTACAATGGAAGCCAAGGAAAATGCTCTGAGTGCACTCTTTAGATTCACTGATCCTACAAATATCGAGTCGCAGCGCGATCTTGTTAAACGAGGGATATATCCTCTACTTGTCAACTTTCTCAACACTGGTTCTGTCACAGCAAAGGCAAGAGCAGCAGCATTCATTGCTGATCTATCAATGAGCACTCCAAAGCTCACAATTGTTTCTAAATCGCCCAGCTGCTGGTTTTTCAAGTCGTCACGAGTTCCCTTATGCTTGGCGCATGGAAGCATATGCAGTGTTGCCACCACATTCTGCCTTATTGAAGCAAATGCCTTACCTGGATTGATCAAATTACTGCACGGAGAGGTTCATGCTACTGCTTATGAAGCAATTCAAACACTTTCTACATTGGTTTTGGAGGATTTTCCTCAGAGAGGAGCCATAGTCCTGCATAAGAACAATGCAATAACACCCTTGTTGGAGATTCTGAATTGGGGTTCTGATTCTCTCAAAGCTGAAGCTCTAGGACTATTAGAAAAGGTCTTTGTGTCAAAGGAAATGGTGGAGTATTATGGAACAACAGCCAGGTTGAGGCTAATTGGAATCACTGGCATGAATATCTATGGAGATGGCCACCTTAGAAGGAAGGCTGCTAAGGTACTATCTTTGCTCGAGCGATATTCGAGGTCATCGTCCTCTGCAATCTCCGGTGTTCCGGAGTGA 3042 0.4254 MVGLEIIPIGTILAVLTNQVLKTAHAAANVLVGKESFKILSKHLFDIEPVLKELQLQELNESQAARAALESLESDVKRANNLVEKYRNRGRFYLLVKCRYIVGEVEQVTRDIGKSLAALSLANTEVLTRISDQVDRLQNEMQRVEFEASRSQLQIVEKLDYALREQKLDQAFANDMLEEIARAVGVPVEPSEISKELASIRKEKEEAASRKERAEYIFLEQIIELLSRADAARDYEGVKKQYFERVQVIERYDSRERYILPLNPFLCSITGVVMVDPVSLCTGTTCERSAIEDWFHNGNRTDPETNEVLEETTLRSNIPLRQSIEEWRELNYCLVIRSIKENLITNYDVHESLSLIQALMRENSINKDWISIGGVTDVVISILGNSNYKEAKLKILITLKDVVEGHARNKEKVAESQGWDQIICCLGGDSSTSKAAIDLLYELLQGRSGWNKSFCKKLSQNQNAIPFLVTFLKGSDNDSAEAAEKILMEVFKINEESITTAARFGWYKPLVDRMIQEPDSRLGMVKGIVSLELNLLELKELGEEGVIPPLLEMLCGSIESKDLSLSALVKLAGCPPNKRIIAESGGVPLILDLTFSTRMRTFITIKCCEILEKLSFDEDGIDLFVDREGNQLELDSIITNLLALQQSFNTGYNFRKPALRALLGICKFETDLIKKAILAANSVSLILPLLDDSDSEIRETAINLLFLFSQHEPDGVVEYLFRPRRLEALIGFLENDENDNVRMAAAGLLANLPKSERELTMKLIELGGLDAIISILRTGTMEAKENALSALFRFTDPTNIESQRDLVKRGIYPLLVNFLNTGSVTAKARAAAFIADLSMSTPKLTIVSKSPSCWFFKSSRVPLCLAHGSICSVATTFCLIEANALPGLIKLLHGEVHATAYEAIQTLSTLVLEDFPQRGAIVLHKNNAITPLLEILNWGSDSLKAEALGLLEKVFVSKEMVEYYGTTARLRLIGITGMNIYGDGHLRRKAAKVLSLLERYSRSSSSAISGVPE* 1014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g2021 1013 Gene3D - 344 534 IPR011989 -
Amo09g2021 1013 Gene3D - 849 1008 IPR011989 -
Amo09g2021 1013 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Amo09g2021 1013 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 1010 - -
Amo09g2021 1013 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 1010 - -
Amo09g2021 1013 SUPERFAMILY RING/U-box 249 330 - -
Amo09g2021 1013 SMART arm_5 574 616 IPR000225 GO:0005515
Amo09g2021 1013 SMART arm_5 534 573 IPR000225 GO:0005515
Amo09g2021 1013 SMART arm_5 406 445 IPR000225 GO:0005515
Amo09g2021 1013 SMART arm_5 713 754 IPR000225 GO:0005515
Amo09g2021 1013 SMART arm_5 756 796 IPR000225 GO:0005515
Amo09g2021 1013 SMART arm_5 670 710 IPR000225 GO:0005515
Amo09g2021 1013 SMART arm_5 872 912 IPR000225 GO:0005515
Amo09g2021 1013 SMART arm_5 916 956 IPR000225 GO:0005515
Amo09g2021 1013 SUPERFAMILY ARM repeat 365 733 IPR016024 -
Amo09g2021 1013 Gene3D - 535 848 IPR011989 -
Amo09g2021 1013 Gene3D - 9 123 IPR036537 GO:0007166
Amo09g2021 1013 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Amo09g2021 1013 Coils Coil 127 154 - -
Amo09g2021 1013 Coils Coil 62 89 - -
Amo09g2021 1013 SUPERFAMILY ARM repeat 648 998 IPR016024 -
Amo09g2021 1013 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 263 334 IPR013083 -
Amo09g2021 1013 Pfam U-box domain 265 329 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g2021 Amo-Chr9 84534884 84539190 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g2021 265 970 U-box Gene Family AT1G76390 27.392 2.88e-36 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g2021 - - gmx:100783638 1555.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g2403 19 111523500 111527921 Amo09g2021 09 84534884 84539190 hybridization