Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g1978 ATGTTTAGAAAAAGTAGTTCTTGTTTTTTTAAGACTCTTAGGGATGGTGCTGCTGTGACAGGGGCATCATTGATTGCAGTGAATGTCACTGGAAATGCTATTTATGATCCCATAAGCTCAATCGTAGTTGGCAACTTACTTGGCATGGATCCTTGTCGCCCTGGTGTCAAAGAAGAGTGGAACTATGCACTAAAGCTGGTACGCATGGTTACCGGAGACAACCTTCAAACAGCAAGGGCAATAGCTTTGGAGTGTGGGATACTTACTCCTAATGACAAGCTTTTGCTTATGCAAGCTCTACGTAAAGGAGGTAAAGTTGTTGCCGTCACAGGAGATGGAACCAATGATGCCCCTGCACTTCACGAGGTTTGA 372 0.4435 MFRKSSSCFFKTLRDGAAVTGASLIAVNVTGNAIYDPISSIVVGNLLGMDPCRPGVKEEWNYALKLVRMVTGDNLQTARAIALECGILTPNDKLLLMQALRKGGKVVAVTGDGTNDAPALHEV* 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g1978 123 Gene3D - 92 123 IPR023214 -
Amo09g1978 123 PANTHER CATION TRANSPORTING ATPASE 90 122 - -
Amo09g1978 123 PANTHER CATION TRANSPORTING ATPASE 47 89 - -
Amo09g1978 123 Pfam haloacid dehalogenase-like hydrolase 44 122 - -
Amo09g1978 123 Gene3D - 23 91 IPR023214 -
Amo09g1978 123 PANTHER CALCIUM-TRANSPORTING ATPASE 90 122 - -
Amo09g1978 123 PANTHER CALCIUM-TRANSPORTING ATPASE 47 89 - -
Amo09g1978 123 SUPERFAMILY HAD-like 43 121 IPR036412 -
Amo09g1978 123 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 42 121 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g1978 Amo-Chr9 83103794 83105732 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g1978 37 122 Primary Pumps ATPases AT3G21180 46.970 1.55e-26 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g1978 K01537 - fve:101307142 101.293