Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g1972 ATGGAGGAAGAAGAATGCGAGGTTTCTTCGGTACTCAACCACCTCATCTTAGCCGCCACCGAAATCTCAGAGATCGACGGCTTCAAGCACGTCATCAAGAGACAGTGCTTCGACCTCAGCCGTAGGATTAGGTTTCTCGCTCCTCTCTTTCAGGAACTTCTCGACGTTACAGACGCCGTCCCAAACGACGCCGTTTCGGCGCTCCTCTCTCTTAAGAAAGCTCTTGCCTCAGCCAAGGAACTCCTCCACTTTTGTTGCCGAGCAAGCCAGGTTTTCATGATACTGGAGAGGGAGCAAATTAAATGCAAATTTAATGATCTCGCTTTTAATTTTGAAGAAGCTATAGGCAAGATATCCTGTGACAAACTTCATATATCTGAAGAAGTCAAGGAGCAGGTTGCACTCGTGACTGCACAGTTTGGAAGAGCCAGGGAACTTTTTGATCCACCTGGTCTTCAGCTTTATGATAATCTGTTGTCCATTTGCAACCAGAGCTATGATGTGATTCCTGAACAAGATAAACTGCATATAATCTGCGAAAAGCTGCACTTTACGAATGTGGGTGACATCAAACAAGAGTTGATTGCACTCGATAAGATGGTTGTAGACATGGGTGCTCATTTTGAGAAAAGCACACAGGATATGTCTACAGTCTTGAAAAAAATTGAAGATTTCATACTGACAGAATCTGCAGATGTTATTATGCTATCAAGTGATGATTCCTCTACTCAAGCTGATGAGTCATACACAAAATTATGTTCTCAATCACTGGTTATACCAGATGAGTTTCGCTGCCCAATATCTCTGGAGCTAATGAAAGATCCTGTAATCATTTCTACGGGGCAGACATACGAGCGAGCGTGCATAAAGAAATGGCTTGAAGAAGGCCATGGAACATGTCCTAAGACTCAGCAGATTCTTTCAAGCTCTGTCCTTATACCCAACCATGTTTTATATATCCTGATATCGAATTGGTGTGAAGCAAATGGAGTGGAGCCACCTAAAAGAACAGAGAAGTTACGACTCTGCAAGGCAACATCAGATGGCTCTTCTGAATTTATAGATATTGATACTCTATTGAGCAGACTTACTTCCAGTGACATTGAAGATCAGCGATGCACAGCAGAGGAGCTCCGTCTTCTAGCCAAGCGAAGCAGCCAAAACCGAATATTGATTGCTGAGGCTGGTGCTATACCCCTTCTTGTTGATCTCCTCTATGTACCTGACAAGCGCACTCAAGAGCATGCAGTTACTGCTCTTCTGAACCTATCTATTTGTGGGAATAACAAAGAGCGCATCATGGCTTCTGAAGCTGTTCTAGGAATTGTTCACGTGCTGAAAAATGGTGTTATGGAAGCACGGGAAAATGCTGCAGCCACCCTTTTCAGTCTCTCTGCACTGAATGAGAATAAAGTGTTAATTGGAGCATCTGGAGCAATTAAAGCACTAGTCACTCTTTTCTGTGAGGGAAGTCAAAGAGGGAAGATGGATGCTGCAACAGCTTTATTCAATCTGTGCTTATATCAAGGGAATAAAGGACGTGCAATTAGGGCTGGTATCATGCCTAAGTTGACGGAAATGGTAACTGAACCTGGTGAGGAGATGAGGGATGTGGCATTGGCACTTATGGCTTTACTAGTTAGCCACCCGGAGGGAAAAGCAGTAGTTGGATCCATGAATGCTATGCCAACTTTGGTGGATATAGTCACTAATGGATCTCCTAAGAACAAAGAGAATGCAACTTCCGTGCTTGTTCACCTCTGTATCGGAGATCCAATGAATGTATCAAGTGCCTGTTCACTTGGGGTGATCAATCCTCTCTTGGACCTTGCAGAAAATGGTTCGGACAGGGGCAAGCGCAAAGCCGCACAGCTTCTTGAGCTGATCGGCATTCTGAGATCGTTGTAG 1908 0.4423 MEEEECEVSSVLNHLILAATEISEIDGFKHVIKRQCFDLSRRIRFLAPLFQELLDVTDAVPNDAVSALLSLKKALASAKELLHFCCRASQVFMILEREQIKCKFNDLAFNFEEAIGKISCDKLHISEEVKEQVALVTAQFGRARELFDPPGLQLYDNLLSICNQSYDVIPEQDKLHIICEKLHFTNVGDIKQELIALDKMVVDMGAHFEKSTQDMSTVLKKIEDFILTESADVIMLSSDDSSTQADESYTKLCSQSLVIPDEFRCPISLELMKDPVIISTGQTYERACIKKWLEEGHGTCPKTQQILSSSVLIPNHVLYILISNWCEANGVEPPKRTEKLRLCKATSDGSSEFIDIDTLLSRLTSSDIEDQRCTAEELRLLAKRSSQNRILIAEAGAIPLLVDLLYVPDKRTQEHAVTALLNLSICGNNKERIMASEAVLGIVHVLKNGVMEARENAAATLFSLSALNENKVLIGASGAIKALVTLFCEGSQRGKMDAATALFNLCLYQGNKGRAIRAGIMPKLTEMVTEPGEEMRDVALALMALLVSHPEGKAVVGSMNAMPTLVDIVTNGSPKNKENATSVLVHLCIGDPMNVSSACSLGVINPLLDLAENGSDRGKRKAAQLLELIGILRSL* 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g1972 635 SMART Ubox_2 262 325 IPR003613 GO:0004842|GO:0016567
Amo09g1972 635 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 259 332 IPR013083 -
Amo09g1972 635 SUPERFAMILY RING/U-box 258 334 - -
Amo09g1972 635 CDD RING-Ubox_PUB 263 305 IPR045210 -
Amo09g1972 635 Gene3D - 342 635 IPR011989 -
Amo09g1972 635 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 10 629 - -
Amo09g1972 635 Pfam Armadillo/beta-catenin-like repeat 468 506 IPR000225 GO:0005515
Amo09g1972 635 Pfam Armadillo/beta-catenin-like repeat 385 424 IPR000225 GO:0005515
Amo09g1972 635 Pfam U-box domain 259 329 IPR003613 GO:0004842|GO:0016567
Amo09g1972 635 Gene3D - 10 121 IPR036537 GO:0007166
Amo09g1972 635 SMART arm_5 385 425 IPR000225 GO:0005515
Amo09g1972 635 SMART arm_5 467 507 IPR000225 GO:0005515
Amo09g1972 635 SMART arm_5 591 631 IPR000225 GO:0005515
Amo09g1972 635 SMART arm_5 508 548 IPR000225 GO:0005515
Amo09g1972 635 SMART arm_5 549 589 IPR000225 GO:0005515
Amo09g1972 635 ProSiteProfiles U-box domain profile. 258 332 IPR003613 GO:0004842|GO:0016567
Amo09g1972 635 PANTHER U BOX DOMAIN-CONTAINING 10 629 - -
Amo09g1972 635 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 396 438 IPR000225 GO:0005515
Amo09g1972 635 SUPERFAMILY ARM repeat 355 629 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g1972 Amo-Chr9 82979206 82984901 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g1972 1 632 U-box Gene Family AT3G46510 51.975 0.0 665
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g1972 - - var:108326899 773.852