Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g1953 ATGAGCTTTTCATCACTGCTACTACCACTTTTCTTCACTCTCATGATTCTTTTCCTCTTGAACCCAACAATGGTATATGGGAATAATGATGAGGAAGAAGAAGAGCTACTAGCACTGATGGACATGAAGGATAGTATGGATCCATATGGTCACTACCTAACCTCATGGACCATCAATGGCAACCCATGTGATGGTGCTTCCTTTGAAGGTGTGGCCTGCAATGAAAAGGGCCAAGTTGCAAATATTTCTTTGCAGGGAAAGGGTCTCTCAGGGAAGCTTTCACCAGCCATTGGTGGGCTCAAGCATTTGACAGGACTCTACTTGCATTATAACTCTTTGTATGGTGAGATACCAAGGGAAATTGCAAACTTGACTCAGCTTACTGATTTGTACCTGAATGTGAATCATCTTTCTGGGAAAATCCCAACGGAGATTGCCAACTTGAACAACTTGCAAGTTTTGCAGCTTTGCTATAATCAGTTGACAGGAAGCATACCTACCCAGCTTGGTTCTTTGAAGAAGCTGAGTGTTGTTGCGCTTCAGTCAAACCAGTTGACTGGCGCTATCCCTGCTAGTTTAGGTGACTTGCCTATACTGATGAGGCTTGATTTGAGTTCTAACAAACTCTTCGGTTCCATTCCCACTAGCCTTGCTGATCCTCCTTCACTCAAAGTTCTTGATCTTCACAACAATACTCTTTCTGGGAATGTGCCTCCTGCTCTGAAGAGACTTGATCATGGATTTCTCTATGAGGACAATCCGGGGCTATGTGGACTTGACTTTCCATCCCTTAAGGCTTGCGGTTCTTTAAATCGCAGGCCTGAACCTTATGGAGCAGCAACAAGAGATATCCCAGAAACTGCAAATGTGAAGTTACCTTGCAATGGAAGCCAGTGCCTAAACTCTCCAAAATCAAAACAAGTACCATCCATTGCCATTGGCATAGTCGTCATTGTGATTGCAGTGTCAGCAATTGGTCTCTTTGCCTTCACATTATTTCGCAGGCGAAAACAGAAGCTAGGAAACTCTTTTCATGTCTCTGATGGCCGGCCAAGTATCGACGAATCCAGGAGTATATACAGGAAAAGTGGATCTCCTTTGGCGAGCCTCGAGTACTCTACTGGATGGGACCCTTTAGCTGATTTTGTTGCTGTGAAGAGTATCAGCAAAACTAGCTGCAAGTCAGATGAAGGTGAATTCTTGAAGGGATTGAGCATTTTGACATCTCTGAGGAATGATAATTTGGTGAAGCTGAGAGGGTTTTGTTGTTCAAGTGGAAGAGGTGAATGCTTCTTGGTTTATGACTTTGTTTCCAACGGAAATCTTTCACGGTTTCTTGATGTGAAGGAAGGAGATGGAGAAGTTCTTGAATGGTCAACCAGAGTTTCTATTGTGAAAGGGATTGCTAAAGGTGTAGCATATTTACATGCACACAAGGTAAAGAAACCGGTTCTTGTTCACCAAAACATCTCGGCCGAGAAAGTGCTCGTCGATCACAGGTATAACCCAATGCTGGCAGATTCCGGCCTTCACAAGCTTCTTACCAATGACATTGTCTTCTCTGAACTCAAGGCCAGTGCAGCAAAGGGTTACCTTGCTCCTGAGTATGCCACCACCGGCCGGTTCACCCAGACCAGTGATGTTTATGCTTTCGGGGTGCTCCTATTGCAGATCCTCTCCGGGAAGCAGCAGATCAGTAACTCAATCAGGCTCGCCGCGGAAGCATCAAGATTCCAAGAATTCATTGATCCAAATCTCCATGGGAGATTCTTTGAATACGAAGCCACTAAACTGGCAAAAATCGCTTTGCTTTGCTGCAATGAGTCTCCCTTTGAGAGGCCATCTATGGAAGCCATTGTTCAAGAACTGGGAAATTGTAGTAGCTGTATCTGA 1893 0.4453 MSFSSLLLPLFFTLMILFLLNPTMVYGNNDEEEEELLALMDMKDSMDPYGHYLTSWTINGNPCDGASFEGVACNEKGQVANISLQGKGLSGKLSPAIGGLKHLTGLYLHYNSLYGEIPREIANLTQLTDLYLNVNHLSGKIPTEIANLNNLQVLQLCYNQLTGSIPTQLGSLKKLSVVALQSNQLTGAIPASLGDLPILMRLDLSSNKLFGSIPTSLADPPSLKVLDLHNNTLSGNVPPALKRLDHGFLYEDNPGLCGLDFPSLKACGSLNRRPEPYGAATRDIPETANVKLPCNGSQCLNSPKSKQVPSIAIGIVVIVIAVSAIGLFAFTLFRRRKQKLGNSFHVSDGRPSIDESRSIYRKSGSPLASLEYSTGWDPLADFVAVKSISKTSCKSDEGEFLKGLSILTSLRNDNLVKLRGFCCSSGRGECFLVYDFVSNGNLSRFLDVKEGDGEVLEWSTRVSIVKGIAKGVAYLHAHKVKKPVLVHQNISAEKVLVDHRYNPMLADSGLHKLLTNDIVFSELKASAAKGYLAPEYATTGRFTQTSDVYAFGVLLLQILSGKQQISNSIRLAAEASRFQEFIDPNLHGRFFEYEATKLAKIALLCCNESPFERPSMEAIVQELGNCSSCI* 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g1953 630 SUPERFAMILY Protein kinase-like (PK-like) 381 623 IPR011009 -
Amo09g1953 630 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 382 628 - -
Amo09g1953 630 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 5 381 - -
Amo09g1953 630 SUPERFAMILY L domain-like 35 244 - -
Amo09g1953 630 Pfam Leucine rich repeat N-terminal domain 33 74 IPR013210 -
Amo09g1953 630 Gene3D Ribonuclease Inhibitor 147 267 IPR032675 -
Amo09g1953 630 ProSiteProfiles Protein kinase domain profile. 319 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo09g1953 630 Gene3D Phosphorylase Kinase; domain 1 371 436 - -
Amo09g1953 630 PANTHER PROTEIN NSP-INTERACTING KINASE 2-LIKE 382 628 - -
Amo09g1953 630 PANTHER PROTEIN NSP-INTERACTING KINASE 2-LIKE 5 381 - -
Amo09g1953 630 Pfam Leucine rich repeat 174 233 IPR001611 GO:0005515
Amo09g1953 630 Pfam Protein tyrosine and serine/threonine kinase 383 623 IPR001245 GO:0004672|GO:0006468
Amo09g1953 630 Gene3D Ribonuclease Inhibitor 35 146 IPR032675 -
Amo09g1953 630 Gene3D Transferase(Phosphotransferase) domain 1 437 629 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g1953 Amo-Chr9 82139520 82142361 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g1953 7 471 Miscellaneous Gene Families AT4G22730 47.593 5.73e-154 452
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Amo09g1953 PK_Tyr_Ser-Thr 3.8e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g1953 - - gmx:100775422 945.651
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g2365 19 108351277 108354439 Amo09g1953 09 82139520 82142361 hybridization
Amo05g3170 05 93171927 93175881 Amo09g1953 09 82139520 82142361 PCT
Amo09g1953 09 82139520 82142361 Amo05g3170 05 93171927 93175881 PCT