Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g1947 ATGAATTCACCATCGACGCAGTTCGTTTCCTCGAGAAGGATGGGTGTGTATGATCCTATCCAGCAGATCAATATGTGGGGAGATAGCCTCAAAAGTAATGTCAATTTAAGTGCATCCATTCCCTTAATTGATGAAGCCGACATTAAGTTTGATAGTCAGTCAGAGGATGCTTCTCATGGTATCCTGGGAACAAATATCAAATATGACCAAGAAGCAAGTAAACCTGTTGATAAGATACAGAGACGACTTGCGCAAAATCGAGAGGCTGCTCGGAAGAGTCGTTTGCGGAAAAAGGCCTATGTGCAGCAATTAGAATCTAGTCGTTTGAAGTTGATGCAGCTAGAGCAAGAGCTTGAACGTGCGAGACAGCAGGGAATGTATGTAGCCGGTGGATTGGATACTAATCATCTAGGTTTTGCTGGACCTATTAATTCAGGAATCACAGCTTTCGAGATGGAGTATGGACACTGGGTTGAGAAGCAAAATAGTCAAATCTTAGAACTGAGAAACGCTTTAAATTCTCATATTGGTGACTTAGAGCTGAGGATACTTGTAGATGATATGATGAATCACTACACTGAAATCTTTCGTATGAAATCTGCTGCTGCAAAAGCAGACGTTTTCTATGTAATGTCCGGCATGTGGAAAACTACGGCCGAGAGATTTTTCTTATGGATTGGAGGCTTTCGCCCCTCTGAACTTCTAAAGGTTCTTCTTCCTTTGATTGAACCTTTGACGGAGCAACAACGATTGGATGTCTGCAACCTCGGACAATCATGTCAGCAAGCCGAAGACGCCCTTTCACAAGGTATGGAGAAACTACAGCAAACACTTGCTGATAGCATAGCTGCCGGACAACTGATGGAAGGAAGTTATATTCCGCAGATGGCTACTGCAATAGAGAAGTTGGAAGCTCTTGTGAGCTTTGTGAACCAGGCTGATCATCTTCGGAAGGAGACACTGCAGCAGATGTCTCGAATATTGACTATCCGTCAGGCAGCTCGATGCTTGCTTGCTTTGGGGGAATACTTCCAACGCCTGAGAGCTCTGAGCTCGCTTTGGTCGAATCGTCCTCGCGAACCAGCTTAG 1089 0.4454 MNSPSTQFVSSRRMGVYDPIQQINMWGDSLKSNVNLSASIPLIDEADIKFDSQSEDASHGILGTNIKYDQEASKPVDKIQRRLAQNREAARKSRLRKKAYVQQLESSRLKLMQLEQELERARQQGMYVAGGLDTNHLGFAGPINSGITAFEMEYGHWVEKQNSQILELRNALNSHIGDLELRILVDDMMNHYTEIFRMKSAAAKADVFYVMSGMWKTTAERFFLWIGGFRPSELLKVLLPLIEPLTEQQRLDVCNLGQSCQQAEDALSQGMEKLQQTLADSIAAGQLMEGSYIPQMATAIEKLEALVSFVNQADHLRKETLQQMSRILTIRQAARCLLALGEYFQRLRALSSLWSNRPREPA* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g1947 362 ProSiteProfiles DOG1 domain profile. 147 357 IPR025422 GO:0006351|GO:0043565
Amo09g1947 362 Pfam Seed dormancy control 165 239 IPR025422 GO:0006351|GO:0043565
Amo09g1947 362 Coils Coil 97 124 - -
Amo09g1947 362 PANTHER TRANSCRIPTION FACTOR TGA9 1 361 - -
Amo09g1947 362 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 76 120 IPR004827 GO:0003700|GO:0006355
Amo09g1947 362 SMART brlzneu 74 134 IPR004827 GO:0003700|GO:0006355
Amo09g1947 362 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 81 96 IPR004827 GO:0003700|GO:0006355
Amo09g1947 362 Gene3D - 77 127 - -
Amo09g1947 362 Pfam bZIP transcription factor 77 112 IPR004827 GO:0003700|GO:0006355
Amo09g1947 362 PANTHER TRANSCRIPTION FACTOR TGA1 1 361 - -
Amo09g1947 362 SUPERFAMILY Leucine zipper domain 78 120 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g1947 Amo-Chr9 81907103 81911223 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g1947 1 362 Calmodulin-binding Proteins AT5G65210 71.196 0.0 530
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Amo09g1947 DOG1 5.5e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g1947 K14431 - gmx:100793353 614.379