Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g1939 ATGGATGAGTCAAATAAGCATAAGGCCATCAGAGCCAAAGAGATTTCTGAGAAAATGTTTGCTGCAGGTGATGTTTATACTGCAATGAGGTTCGCTCGTATGGCTCGAAATTTGTTTCCTGGTCTTGAGGGTATTGAGCAGATGATAAAAATATTTGGTATATACCTCGCTGCTAAGATTAAAATAAATGGTGAAATTGATTGGTACACTATGCTTGGTGTAGGCACGCAAGACGATGTTGCCACGATGAGGGAATCGTATGTGAGTTTAGCTTCCCTGATTCACTCTGAGAGGAACAAGTTTGTTGGCGCAGATGGGGCCTTTGAACTTGTTTCGCAAGCATGGAGTGTGCTGTCAGATAAGGCTAAGAGGGCAATGATCGATGAGAAGATTAATGCCCCAGCATTCGATGAGGAGGTGAAGGTGGAAACATGTAAACTTGCAACTGAGTGTGAATATATACCATCAGAAGAGGGGGCTAATTGTGATCACAATGTTACCGAGGCTGCCACTTCAATTGCAAAGATTCAGAAGGAGAATTCACCTGCATCAAGATCAAGTACATTTTGGACTATGTGCCGTAGGTGCAAGCTTGTATTCCTGTACCCTAGAGTTAAAGTTAACTGTAGACTTTTGTGTTTTGTTTGCAACAAAGAATTTATGGCAGTTGAACTAGATAGACGGAAGGTTTTATCAGCAAGGAGGCGCTCCAGGGGTTTGCACACTGTCAATCCACAGGCACATGATGTAAGCAACTTCCATGGCAGTACATTACTGAGAAAAACTTGTCAGGGTTCCTCTGCAACTCAAGAAAAAGATGTTCAACAGATGTATCAGAAAGTAAAGCGAAAGCGCAATGAGGAGCAAGTAACAGAGAGGGAAAATGCCTCCCAAGAGGAGCACCCTGTTGCTAAAAGAAGTTACTTTAATCCTTCCAAGATAAGAAGTGCCTTGGAGGATATGAGCTTGACCAGCTGTGATGAGCGAAACTCAAAGGAGCCGGATTTCAAATATAGCGGGATAACCCAAGCTAAAGAGAGCGGCATTGCAAAAGGCATCTACCAGGCGGAGCTTCGTAACCATTTTATGGACATTGCTGTAAATGCGCTTAGTACAAAACTAGCTGCCCTTAATCCGGATACTAATGATAGCCAGAAAGCAAATGAGACGGGCGAAACATTTTTGAGGGAATCTGAAAGTTGTGATCAAGACAATTGTGAGAAGCCAGACGAAAGGACAAGTGGAGTCCAAGCAACCATGCCATCTGCAGGCTCTAATACTATGACTGACATGCTAACAAAATCTTTGGGGAAGATGTCAATAGAGTTTCCAACTTCCAAATAA 1344 0.4286 MDESNKHKAIRAKEISEKMFAAGDVYTAMRFARMARNLFPGLEGIEQMIKIFGIYLAAKIKINGEIDWYTMLGVGTQDDVATMRESYVSLASLIHSERNKFVGADGAFELVSQAWSVLSDKAKRAMIDEKINAPAFDEEVKVETCKLATECEYIPSEEGANCDHNVTEAATSIAKIQKENSPASRSSTFWTMCRRCKLVFLYPRVKVNCRLLCFVCNKEFMAVELDRRKVLSARRRSRGLHTVNPQAHDVSNFHGSTLLRKTCQGSSATQEKDVQQMYQKVKRKRNEEQVTERENASQEEHPVAKRSYFNPSKIRSALEDMSLTSCDERNSKEPDFKYSGITQAKESGIAKGIYQAELRNHFMDIAVNALSTKLAALNPDTNDSQKANETGETFLRESESCDQDNCEKPDERTSGVQATMPSAGSNTMTDMLTKSLGKMSIEFPTSK* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g1939 447 MobiDBLite consensus disorder prediction 282 301 - -
Amo09g1939 447 Coils Coil 274 294 - -
Amo09g1939 447 PANTHER HEAT SHOCK PROTEIN-LIKE 3 403 - -
Amo09g1939 447 SUPERFAMILY Chaperone J-domain 56 128 IPR036869 -
Amo09g1939 447 MobiDBLite consensus disorder prediction 415 430 - -
Amo09g1939 447 CDD DnaJ 67 120 IPR001623 -
Amo09g1939 447 MobiDBLite consensus disorder prediction 394 430 - -
Amo09g1939 447 PANTHER BNAC03G44070D PROTEIN 3 403 - -
Amo09g1939 447 Pfam DnaJ domain 67 128 IPR001623 -
Amo09g1939 447 ProSitePatterns Nt-dnaJ domain signature. 108 127 IPR018253 -
Amo09g1939 447 MobiDBLite consensus disorder prediction 394 411 - -
Amo09g1939 447 SMART dnaj_3 66 123 IPR001623 -
Amo09g1939 447 MobiDBLite consensus disorder prediction 282 304 - -
Amo09g1939 447 Gene3D DnaJ domain 63 142 IPR036869 -
Amo09g1939 447 ProSiteProfiles dnaJ domain profile. 67 131 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g1939 Amo-Chr9 81682825 81684907 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g1939 2 231 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 26.050 5.42e-17 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g1939 - - ahf:112711122 799.275