Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g1936 ATGGATGAGTCAAATAAGCATAAGGCCATCAGAGCCAAAGAGATTTCTGAGAAAATGTTTGCTGCAGGTGATGTTTATACTGCAATGAGGTTCGCTCGTATGGCTCGAAATTTGTTTCCTGGTCTTGAGGGTATTGAGCAGATGATAAAAATATTTGGTATATACCTCGCTGCTAAGATTAAAATAAATGGTGAAATTGATTGGTACACTATGCTTGGTGTAGGCACGCAAGACGATGTTGCCACGATGAGGGAATCGTATGTGAGTTTAGCTTCCCTGATTCACTCTGAGAGGAACAAGTTTGTTGGCGCAGATGGGGCCTTTGAACTTGTTTCGCAAGCATGGAGTGTGCTGTCAGATAAGGCTAAGAGGGCAATGATCGATGAGAAGATTAATGCCCCAGCATTCGATGAGGAGGTGAAGGTGGAAACATGTAAACTTGCAACTGAGTGTGAATATATACCATCAGAAGAGGGGGCTAATTGTGATCACAATGTTACCGAGGCTGCCACTTCAATTGCAAAGATTCAGAAGGAGAATTCACCTGCATCAAGATCAAGTACATTTTGGACTATGTGCCGTAGGTGCAAGCTTGTATTCCTGTACCCTAGAGTTAAAGTTAACTGTAGACTTTTGTGTTTTGTTTGCAACAAAGAATTTATGGCAGTTGAACTAGATAGACGGAGGGTTTTATCAGCAAGGAGGCGCTCCAGGGGTTTGCACACTGTCAATCCACAGGCACATGATGTAAGCAACTTTCATGGCAGTACATTACTGAGAAAAACTTGTCAGGGTTCCTCTGCAACTCAAGAAAAAGATGTTCAACAGATGTATCAGAAAGTAAAGCGAAAGCGCAATGAGGAGCAAGTAACAGAGAGGGAAAATGCCTCCCAAGAGGAGCACCCTGTTGCTAAAAGAAGTTACTTTAATCCTTCCAAGATAAGAAGTGCCTTGGAGGATATGAGCTTGACCGGCTCTGATGAGCGAAACACAAAGGAGCCAGATTTCAAATATAGCGGGACAAGCCAACCTAAAGAGAGCGGCATTGCAAAAGGCATCTACCAGGTGGAGCTTCGTAACCATTTTATGGACGTTGCTGTAAATGCGCTTAGTACAAAACTAGCTGCTCTTAATCCGGATACTAATGATAGCCAGAAAGCAAATGAGACGGGGGAAACATTTTTGAGAGAATCTGAAAGTTATGATCAAGACAATTGTGAGAAGCCAGAAGAAAGGACAAGCGGAGTCCAAGCAACCATGCCATCTGCAGGCTCTAATACTATGACTGACATGCTAACAAAATCTTTGGGGAAGATGTCAATAGAGTTTCCAACTTCCAAATAA 1344 0.4271 MDESNKHKAIRAKEISEKMFAAGDVYTAMRFARMARNLFPGLEGIEQMIKIFGIYLAAKIKINGEIDWYTMLGVGTQDDVATMRESYVSLASLIHSERNKFVGADGAFELVSQAWSVLSDKAKRAMIDEKINAPAFDEEVKVETCKLATECEYIPSEEGANCDHNVTEAATSIAKIQKENSPASRSSTFWTMCRRCKLVFLYPRVKVNCRLLCFVCNKEFMAVELDRRRVLSARRRSRGLHTVNPQAHDVSNFHGSTLLRKTCQGSSATQEKDVQQMYQKVKRKRNEEQVTERENASQEEHPVAKRSYFNPSKIRSALEDMSLTGSDERNTKEPDFKYSGTSQPKESGIAKGIYQVELRNHFMDVAVNALSTKLAALNPDTNDSQKANETGETFLRESESYDQDNCEKPEERTSGVQATMPSAGSNTMTDMLTKSLGKMSIEFPTSK* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g1936 447 PANTHER BNAC03G44070D PROTEIN 3 406 - -
Amo09g1936 447 Coils Coil 274 294 - -
Amo09g1936 447 MobiDBLite consensus disorder prediction 390 411 - -
Amo09g1936 447 MobiDBLite consensus disorder prediction 379 430 - -
Amo09g1936 447 SUPERFAMILY Chaperone J-domain 56 128 IPR036869 -
Amo09g1936 447 MobiDBLite consensus disorder prediction 415 430 - -
Amo09g1936 447 CDD DnaJ 67 120 IPR001623 -
Amo09g1936 447 Pfam DnaJ domain 67 128 IPR001623 -
Amo09g1936 447 ProSitePatterns Nt-dnaJ domain signature. 108 127 IPR018253 -
Amo09g1936 447 Gene3D DnaJ domain 63 142 IPR036869 -
Amo09g1936 447 MobiDBLite consensus disorder prediction 283 304 - -
Amo09g1936 447 SMART dnaj_3 66 123 IPR001623 -
Amo09g1936 447 PANTHER HEAT SHOCK PROTEIN-LIKE 3 406 - -
Amo09g1936 447 ProSiteProfiles dnaJ domain profile. 67 131 IPR001623 -
Amo09g1936 447 MobiDBLite consensus disorder prediction 283 301 - -
Amo09g1936 447 MobiDBLite consensus disorder prediction 320 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g1936 Amo-Chr9 81565080 81567073 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g1936 2 225 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 26.293 6.06e-17 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g1936 - - aip:107619213 806.979