Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g1926 ATGGTCGTTAGTGGAGGGAAGCCTCTGAAGCGCATGAAGAGGAGAGTCACGGCTGATTTCTACGACTTTCTCTCGTTCCCATCCCCATCACTCGCCGCCCACGAGGGCTTCGCCGGCGCTCCCTTCAGATCTGCCGTCCGATCCTTCCTTACGAAGCACGCGCTTCTCCCGCCGCCTTCCGCGCTCTTCCCTCACCTGCTGACATGGCAGATCCTCTTCCGTGTTGGCGACGTCGCAGGCGAAGGGGGTGCGGAGTCCGGCGGTGCGGCGGCGGTGTGCCTCGACATCGTGGAGGAGGACGTTGCCAGATCCAGATCTGTGTACTGCGACCAGTGCCGAGTTTTCGGTTGGAGCGGCCATCCAGTGTGCGGGAAACGTTACCATTTTATAATCAAAGCTGATGGAAGCTCCATTGGTGGGTACCATAAACCATGTATGTGCTGTGGAGATATCCTGCACTTGTCAGAATCCAAGTGTAAGTCGTGCAACCATGCGACTACCACTGATGATGTGGAGGACTGGGTGTACCACCAGTTAGAGAATACGACACATCTCTTACATGGTGTAGTCCATGCCAATGGTTATGGGCACCTTCTACGGGTTAATGGCAGAGAAGGTGGATCTAGATATCTTTCTGGTTGCCATATCATGGACTTTTGGGATCGCCTATGCAAGACACTTGGAGTCAGAAAAGTTAGCGTGATGGATGTTTCAAAGAAATATGGGTTAGAGTACCGCCTACTCCATACAATCATGAAGGGACATCCCTGGTATGGTGACTGGGGTTATCAATTCGGTTCTGGTAGCTATTGTCTCACGCATGAAGCATACAAGACTGCGGTTGACAGCCTATCCAATTTGCCCTTGTCTACCTACCTGTGCCAAGGACAAAATTCTTCCCTCCCTCGTGTTCAGGGCATGATTTCATACTTTCAATCTTTGTCAGACCATGAGCTTGTAAATGTAAGGGACCTCTTTTGTTTTTTGATGGGTTTGATTCATGATGCTCGCAACACTGCAACAAAGGTTGATGACGTGGCCTGCAAGAAGCGCCGTGTTAACGATTCTGGACTGTTATGGTATTGGGAGAAGAAGGATATTGAACGTGTGGAGGAAGCCATGCTGAAGGTGTTGCGTGCAGTGTCTGGGTCCAATTGGGTGAGCGCTCGAGCTCTTAGGGGTGCAGTCTGCAAGTTGGCCTCTACAGAGCTTCTTGATTATTGCCTTGGAGGACTGGGAGGAAAAGTGGTCTATGGTGGAATGGTTGTTAATGCCCGATGCAACCCTCAAACTGGAACTTTTGAATACAGACTTGAGGCTGCAAATGGCTCCTCCTTTGGAATTATTGCAAACAACTCTTCTGGTTCAAAGTATCCATCCAAAGAGAATCTCCTACAGTGTTTGAGATATTTATATGAGGCTTTGCTTCACCCTCAGATGATGGTAAATTATGCCCCCGAAGGGACAAGGGTTCTTGCAATGAGTTCAGCTCAGAAGCTTCTTGATTGCAAGCAGTTTGTGAAAGACTACACTCCTGGGATGCCCCCAATGTCAGACCTGCAGAAAATACGAATATCATGTCAGGTTGAACTGGTGGATGAAGCTGAAGATCCTGCAGCCAAAACTCCACCGGAACTGATTGTGCTGCCTGCAGATGCCACTGTGTCTGATGTTAAGATCGAAGCAGCAAATGCTTTCCAAGATGTATATCTGATGTTCAGAAGATTTCAAGTTGATGAGCTACTTGGCTATAGCGGTGTTGAAGATCCCACCCAGGTCAAGCACTTATTAGGATCAGAAGAACCCGCCACGGTTTGTGTCCGTGGAAGATGCATGGCGAAGAATGGGCTGAGCAAGTTCCGAATGGAACGAGGACTCGAGAGGTGGACCGTAGATTGCAATTGTGGGGCTAAGGATGATGATGGGGAGAGAATGCTAGCTTGTGACGTATGTGGAGTGTGGCGGCATACTAGGTGTTCTAACATCAGCGACATTGATCCTGTTCCAGCGCGATTCGTTTGCCCAAAATGTCAAAACTCTGACCAAAAGCCCAAGTCTACTGGGCACTGCAAAGAGGTGACAGTGACCAACGTTAGTGCTAGTGGTAGCTGCTTTGGAAATGGCTTGCCAATGCCTTCTGATGTTCGTTAA 2151 0.4933 MVVSGGKPLKRMKRRVTADFYDFLSFPSPSLAAHEGFAGAPFRSAVRSFLTKHALLPPPSALFPHLLTWQILFRVGDVAGEGGAESGGAAAVCLDIVEEDVARSRSVYCDQCRVFGWSGHPVCGKRYHFIIKADGSSIGGYHKPCMCCGDILHLSESKCKSCNHATTTDDVEDWVYHQLENTTHLLHGVVHANGYGHLLRVNGREGGSRYLSGCHIMDFWDRLCKTLGVRKVSVMDVSKKYGLEYRLLHTIMKGHPWYGDWGYQFGSGSYCLTHEAYKTAVDSLSNLPLSTYLCQGQNSSLPRVQGMISYFQSLSDHELVNVRDLFCFLMGLIHDARNTATKVDDVACKKRRVNDSGLLWYWEKKDIERVEEAMLKVLRAVSGSNWVSARALRGAVCKLASTELLDYCLGGLGGKVVYGGMVVNARCNPQTGTFEYRLEAANGSSFGIIANNSSGSKYPSKENLLQCLRYLYEALLHPQMMVNYAPEGTRVLAMSSAQKLLDCKQFVKDYTPGMPPMSDLQKIRISCQVELVDEAEDPAAKTPPELIVLPADATVSDVKIEAANAFQDVYLMFRRFQVDELLGYSGVEDPTQVKHLLGSEEPATVCVRGRCMAKNGLSKFRMERGLERWTVDCNCGAKDDDGERMLACDVCGVWRHTRCSNISDIDPVPARFVCPKCQNSDQKPKSTGHCKEVTVTNVSASGSCFGNGLPMPSDVR* 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g1926 716 CDD PHD_MMD1_like 632 677 - -
Amo09g1926 716 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 1 688 - -
Amo09g1926 716 PANTHER OS01G0877500 PROTEIN 1 688 - -
Amo09g1926 716 Pfam PHD-finger 633 679 IPR019787 -
Amo09g1926 716 SUPERFAMILY FYVE/PHD zinc finger 621 682 IPR011011 -
Amo09g1926 716 SMART PHD_3 632 678 IPR001965 -
Amo09g1926 716 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 618 685 IPR013083 -
Amo09g1926 716 ProSitePatterns Uncharacterized protein family UPF0054 signature. 187 197 IPR020549 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g1926 Amo-Chr9 81333917 81339636 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g1926 92 677 PHD Transcription Factor Family AT5G22260 31.161 9.10e-85 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Amo09g1926 PHD 1.3e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g1926 - - gmx:100818189 1149.81