Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g1880 ATGGCCACCAGGCGTTTGAGGGCATTCAAGCGATGGATGAGTTCCAATGGATTCGAATGGAGCAATGCGTTGGAGTTTGTTGACACCCCGGAAGAGGGAATATCTGTTAGAGCACTGTGCCAACTGAAGGAAGGTGATATTGTGGCTAAGATGCCGAAGGAGGCATGCCTCACTGTAAGGACTAGCGGTGCGCGCCAGATAATCGAAGATGCCGGTTTGGGCGGCTATTTGGGACTTGCAGTTGCCATCATGTATGAGAGGAGTTTGGGTGAAGAATCTCCTTGGGCAGGGTACCTTCAGGTCTTGCCCAAACAAGAGTGTGTGCCATTGGTTTGGACCCTCAATGAAGTCGATGAGCTTCTGCATGGAACCGAGCTTCATCAGACGGTACAAGAAGACAAAGCTCTTATCTGTGAGGACTGGAAAGAAAATATTTTTCCCCTATTGGATTCAGCGCCTTCAAGGCTTAACCCAACATTTTTTGGTATAGAACAATACTTTGCAGCAAAAAGTCTTATTTCTTCACGGGGTTTCGAGATAGATGATTTCCATGGTTTTGGTATGGTTCCCCTGGCAGACCTATTCAATCATAAAACAGGGGCCGAGGATGTGCATTTCACCGCCTCATCTAATTCTGTAGCTGATGATGACGTCGATGATGATAATAGTAACAATGATGAGGGCATTGCTGATGAAGAAGCATTGGCTGAGAAATCTTCCACAGATACAACTGATCTGGATGCTGCTCATGTTGAGAATGGCAATGCTAGTGACACAGACTGTTTGTCGGATACAGGAGATGACGATCCTTCAATGCTGGAAATGATTGTGGTAAAAGATGTCAGCAGTGGAGCAGAGGTGTTTAATACTTATGGGTTGATGGGTAATGCTGCGTTGCTTCATAGATATGGATTTACTGAGCAAGATAATCCCTATGACATTGTTAACATTGATTTGGAAATGGTGATTCAATGGTGCTCTTCTTTGTTTTCTGATCGGCACAGTAGGTCAAGGGTCTCCCTATGGAGAAGGTTAGGCTATTCTGCATGCGGCGACCAAAACTCGGAATATTTCGAGATATCATTTGAAGGAGAACCGCAGACTGAACTCATGGTTTTGTTGTATGTCATGCTGTTGCCGGATAATGCATACCATATGTTGGACCTTTCGCTATCGGTTGCCAGATCTGGGCATGAATCAAGCGATGCTAATCTGTTGGATGATAACATATTCGCAATCAAATCATGTAATGTGAGCAAGAGATCTCTGCTAACAAAAAAAGCACGTGATGGTTTGTTAGCACTTGCAGACACGAGGGAGGGTCTCTATGGTTTGGAACCAATAGAAGACGATATTGCGCGACTGGGAAAGTGTAGTTCAGTTAAAGAGAGGAAGTTGTATCATTCTTTGATGCTGCGCATGTGCGAAAGGAGGATCCTTCAGAGACTCAGACATTATGCTTCTGAGCCATTTGAAATCAATAATCATAGTTCTTCAAGGAAGAAGTTGAAGTCAACAAAGAGAAAAAGATAA 1533 0.441 MATRRLRAFKRWMSSNGFEWSNALEFVDTPEEGISVRALCQLKEGDIVAKMPKEACLTVRTSGARQIIEDAGLGGYLGLAVAIMYERSLGEESPWAGYLQVLPKQECVPLVWTLNEVDELLHGTELHQTVQEDKALICEDWKENIFPLLDSAPSRLNPTFFGIEQYFAAKSLISSRGFEIDDFHGFGMVPLADLFNHKTGAEDVHFTASSNSVADDDVDDDNSNNDEGIADEEALAEKSSTDTTDLDAAHVENGNASDTDCLSDTGDDDPSMLEMIVVKDVSSGAEVFNTYGLMGNAALLHRYGFTEQDNPYDIVNIDLEMVIQWCSSLFSDRHSRSRVSLWRRLGYSACGDQNSEYFEISFEGEPQTELMVLLYVMLLPDNAYHMLDLSLSVARSGHESSDANLLDDNIFAIKSCNVSKRSLLTKKARDGLLALADTREGLYGLEPIEDDIARLGKCSSVKERKLYHSLMLRMCERRILQRLRHYASEPFEINNHSSSRKKLKSTKRKR* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g1880 510 SUPERFAMILY SET domain 4 211 IPR046341 -
Amo09g1880 510 Gene3D set domain protein methyltransferase, domain 1 2 305 - -
Amo09g1880 510 PIRSF RMS1_SET 1 490 IPR011383 GO:0016279|GO:0018026
Amo09g1880 510 Pfam SET domain 33 292 IPR001214 GO:0005515
Amo09g1880 510 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 5 488 - -
Amo09g1880 510 MobiDBLite consensus disorder prediction 214 230 - -
Amo09g1880 510 CDD SET_LSMT 23 306 - -
Amo09g1880 510 SUPERFAMILY SET domain 269 310 IPR046341 -
Amo09g1880 510 ProSiteProfiles SET domain profile. 22 292 IPR001214 GO:0005515
Amo09g1880 510 MobiDBLite consensus disorder prediction 210 243 - -
Amo09g1880 510 PANTHER RIBOSOMAL LYSINE N-METHYLTRANSFERASE 3 5 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g1880 Amo-Chr9 78222357 78226223 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g1880 1 504 NAC Transcription Factor Family AT3G56570 53.846 0.0 525
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Amo09g1880 SET 4.8e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g1880 K05302 - gmx:100794971 701.049