Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g1861 GAGCCCTCTCCCTCTCTCTCTCGTCAAGCCTCTGTCTTCGAGTCTCCTTCTCTCTGTCCGAGCTCACTTTCCTTCCTCCATCGCCGTTACTTTCCTTCCTTTCTTGCCGCCATATTATTGCTACAGATTCTTAGCTGCAGTTGGGCAAAGATTTTTCTCATCTCTGTCATGGCAACTAGACTTCAGTTTGAGAATAATTGTGAAGTTGGAGTCTTCTCAAAACTTACCAATGCCTACTGTTTGGTTGCCATTGGGGGTTCCGAAAATTTCTACAGTGCCTTTGAGGCTGAGTTAGCAGATGTTATCCCTGTTGTCAAAACCTCCATTGGTGGAACTCGTATCATTGGTCGTCTTTGTGTTGGAAACAAGAATGGTCTTCTCTTGCCCCATACCACAACAGACCAAGAACTTCAACATTTGAGGAATAGTTTACCCGATCAAGTTGTTGTTCAACGCGTAGATGAAAGATTATCGGCTCTGGGAAATTGTATAGCATGTAATGACCATGTTGCCCTCGCACACACCGATCTCGACAAGGAAACTGAGGAGTTAATTGCAGATGTTCTTGGAGTAGAAGTTTTCAGGCAAACTATCGCGGGCAACATTCTTGTTGGCAGTTACTGCGCCTTATCAAACAGGGGTGGTTTGGTTCACCCACATACTTCAATTGAAGACTTGGATGAGCTTTCGACCCTTCTTCAGGTGCCCTTGGTGGCTGGGACTGTCAACCGTGGCAGTGAAGTAATAGCAGCCGGCATGACAGTAAATGACTGGACAGCATTTTGCGGGTCAGATACGACGGCAACGGAACTGTCCGTGATTGAGAGTGTTTTCAAGCTGAGAGAAGCACAGCCCAATGCAATTGCGAATGAGATGAGGAAATCTCTCATTGATAGTTATGTATGA 906 0.4581 EPSPSLSRQASVFESPSLCPSSLSFLHRRYFPSFLAAILLLQILSCSWAKIFLISVMATRLQFENNCEVGVFSKLTNAYCLVAIGGSENFYSAFEAELADVIPVVKTSIGGTRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRVDERLSALGNCIACNDHVALAHTDLDKETEELIADVLGVEVFRQTIAGNILVGSYCALSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGMTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIANEMRKSLIDSYV* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g1861 301 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 57 301 - -
Amo09g1861 301 SUPERFAMILY Pentein 57 280 - -
Amo09g1861 301 CDD IF6 58 279 IPR002769 GO:0042256|GO:0043022
Amo09g1861 301 Gene3D - 57 281 - -
Amo09g1861 301 Pfam eIF-6 family 60 259 IPR002769 GO:0042256|GO:0043022
Amo09g1861 301 Hamap Translation initiation factor 6 [eif6]. 46 301 IPR002769 GO:0042256|GO:0043022
Amo09g1861 301 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 57 301 IPR002769 GO:0042256|GO:0043022
Amo09g1861 301 TIGRFAM eIF-6: putative translation initiation factor eIF-6 60 280 IPR002769 GO:0042256|GO:0043022
Amo09g1861 301 SMART eIF6neu2 59 260 IPR002769 GO:0042256|GO:0043022
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g1861 Amo-Chr9 77175214 77179352 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g1861 57 301 Eukaryotic Initiation Factors Gene Family AT3G55620 92.245 3.26e-174 479
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g1861 K03264 - ming:122066887 471.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g2312 19 104255584 104260502 Amo09g1861 09 77175214 77179352 hybridization
Amo05g3292 05 95143000 95146053 Amo09g1861 09 77175214 77179352 PCT
Amo09g1861 09 77175214 77179352 Amo05g3292 05 95143000 95146053 PCT