Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g1802 GCTAGTTCAAACAAAAACCCTAAATCCCAAAACACTAATCCCATTAGAAAACTAAGAAAGATCGCCAAAACGGAGAACGTCGATTCCTTCAACACCAACATCAATAGTGAACCATTCTTTTGCAAAATCTGCACCGAGACCAAAACAAAAAAAAAGAATCTTTTACCACAATCACACGTTTCCTCACAGGTTCATCGCGTTAAAATTCATTGTCCAATTTGCCTAAGTAGTTATTTGAACGTCGAGGAATGTCGCAATATTCTTCCAAAAAAGGTTTTCGATCTGTGGGGAAAATTATTGTGTGAAGCCAGGATACCTGAGGCTGACAAATTCTATTGTCCCTTTAAGGACTGTTCTGCGTTCATGATTGATGACGGTGACCACAATAGCAGAAAATTGGCCAGAAAATTTATGTGTCCTCATTGTGATAGAATATTTTGTGCACAGTGCAAGGTTGCTTGGCACCATGGAATCAAATGCAAGGAGTTTCAAAGTCGTAACAAAGACAGGATGGAGAAGGAGGATGTTATGCTGATGGGGTTGGCGAAGAAAAAGAGTTGCCAGAGAATACATAATTGGATATCTGTCTAA 591 0.3926 ASSNKNPKSQNTNPIRKLRKIAKTENVDSFNTNINSEPFFCKICTETKTKKKNLLPQSHVSSQVHRVKIHCPICLSSYLNVEECRNILPKKVFDLWGKLLCEARIPEADKFYCPFKDCSAFMIDDGDHNSRKLARKFMCPHCDRIFCAQCKVAWHHGIKCKEFQSRNKDRMEKEDVMLMGLAKKKSCQRIHNWISV* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g1802 196 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 27 189 - -
Amo09g1802 196 ProSiteProfiles TRIAD supradomain profile. 37 196 IPR044066 -
Amo09g1802 196 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 27 189 IPR031127 GO:0004842|GO:0016567
Amo09g1802 196 Pfam IBR domain, a half RING-finger domain 108 160 IPR002867 -
Amo09g1802 196 SUPERFAMILY RING/U-box 100 165 - -
Amo09g1802 196 SMART ibrneu5 94 160 IPR002867 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g1802 Amo-Chr9 74583140 74584229 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g1802 82 186 C3H Transcription Factor Family AT2G19610 27.928 2.70e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g1802 K11975 - aip:107614633 217.624