LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo09g1768	ATGGCTGTGTTGTTCCTACAACTCAGTTTTTCCATGGAGATCTTCTGCCTCTCTTCTTCTCATGCAGATAGAATTTCTCATCTTCCTGGACAACCCCATGTAGGCTTTCAACAGTTCTCAGGATATATTACAGTTGCGATGACAACGAAACACAAGGAAGCTGATCCAGCCTCAAAGCCTCTTGTGCTGTGGCTCAATGGAGGACCTGGTTGTTCTTCCCTTGGAGTAGGTGCATTCTCAGAAAATGGACCTTTCAGGCCAGATGGGGAAGCTCTTGTTCAAAATGAGTATAGTTGGAACAAAGTGGCAAACATGTTGTATTTGGAGACACCAGCTGGAGTGGGGTTCTCTTATGCTAAAGGTAGCTCCTCTTATATCAGAGTGAATGATGAAATAACAGCCAGGGACAATCTTGTATTCTTGCAACGCTGGTTTGACAAATTCCCTCAATTCAAGCACAGAGACTTGTTTGTAACAGGTGAAAGTTATGCAGGTAAATGGGCATTTATCATGATTCACCATCATGGTCTCTTTGCATTATTGCAGTTGGGTAATCCACTTGTAGAATATGCCACTGACTTCAATTCAAGGCTTGAGTTTTTTTTGTCTCACGGAGTTAATATCAGATTCAACCTTATGAAATGTTCACCACAGATTGTAACTATTCTCGCCAAAGAAACAAGCAAATTTGTGGACAAATATGATGTCACCCTTGATGTTTGCATCTCCTCAGTCCTTTCACAGTCCAAAGTTATTTGCCCGCAAACCCAAAAAATTGAGAGCATTGATGTGTGCGTAGATGACAAAGTTACAAATTATTTGAACAGAAGAGATGTGCAGCAGGTGCTCCATGCCAAGCTCATTGGAGTTCGCAAGTGGGATGTCTGCAGCAACATCCTTGACTATGATATGCTCAACCTGGAAGTTCCTACACTCCCTGTTGTTGGAGCACTCCTAAAAGCTGGACGTGATCAAGATTCAGTGATTCCACTGACCGGAAGCCGCACCTTGGTTCAAAAGCTGTCAAAACAATTCGGACTGAATACAACAGTCCCTTACAGAGTATGGTTTGAAGGTCAACAGGTTGGTGGATGGACTCAAGTTTATGGCAACATTCTGTCATTTGCAACCATCAGAGGGGCCTCCCATGAAGCTCCTTTCTCACAGCCTGAAAGATCACTTGTTTTTATTTAA	1194	0.428	MAVLFLQLSFSMEIFCLSSSHADRISHLPGQPHVGFQQFSGYITVAMTTKHKEADPASKPLVLWLNGGPGCSSLGVGAFSENGPFRPDGEALVQNEYSWNKVANMLYLETPAGVGFSYAKGSSSYIRVNDEITARDNLVFLQRWFDKFPQFKHRDLFVTGESYAGKWAFIMIHHHGLFALLQLGNPLVEYATDFNSRLEFFLSHGVNIRFNLMKCSPQIVTILAKETSKFVDKYDVTLDVCISSVLSQSKVICPQTQKIESIDVCVDDKVTNYLNRRDVQQVLHAKLIGVRKWDVCSNILDYDMLNLEVPTLPVVGALLKAGRDQDSVIPLTGSRTLVQKLSKQFGLNTTVPYRVWFEGQQVGGWTQVYGNILSFATIRGASHEAPFSQPERSLVFI*	398

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo09g1768	397	ProSitePatterns	Serine carboxypeptidases, histidine active site.	373	390	IPR033124	GO:0004185
	Amo09g1768	397	ProSitePatterns	Serine carboxypeptidases, serine active site.	158	165	IPR018202	GO:0004185
	Amo09g1768	397	Gene3D	-	314	397	-	-
	Amo09g1768	397	PANTHER	CARBOXYPEPTIDASE	17	395	-	-
	Amo09g1768	397	Gene3D	-	265	301	-	-
	Amo09g1768	397	PANTHER	SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE	17	395	IPR001563	GO:0004185\|GO:0006508
	Amo09g1768	397	SUPERFAMILY	alpha/beta-Hydrolases	19	396	IPR029058	-
	Amo09g1768	397	Pfam	Serine carboxypeptidase	32	396	IPR001563	GO:0004185\|GO:0006508
	Amo09g1768	397	Gene3D	alpha/beta hydrolase	20	243	IPR029058	-
	Amo09g1768	397	PRINTS	Carboxypeptidase C serine protease (S10) family signature	144	169	IPR001563	GO:0004185\|GO:0006508
	Amo09g1768	397	PRINTS	Carboxypeptidase C serine protease (S10) family signature	108	118	IPR001563	GO:0004185\|GO:0006508
	Amo09g1768	397	PRINTS	Carboxypeptidase C serine protease (S10) family signature	373	386	IPR001563	GO:0004185\|GO:0006508
	Amo09g1768	397	PRINTS	Carboxypeptidase C serine protease (S10) family signature	95	107	IPR001563	GO:0004185\|GO:0006508

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo09g1768	Amo-Chr9	72464705	72467701	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo09g1768	273	396	Calmodulin-binding Proteins	AT2G22960	22.727	7.59e-07	47.4

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo09g1768	K16297		-	gmx:100795668	590.497