LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo09g1748	ATGGTTGATTTGATGTTTGAGAGAAGGGGTGGAGTGGTTGATGTTATCATCCCTGGATATGAGGAAGATTTCAAATGTAAGATCATTCCTCCACGTGAGGCCTGGAGGATCAAAGTCAGGGTACTAAGGGCTTGGACTGTACCTAGCTTTGGTAATGCAGATGTTCCAAATTCAATGGAACTTATTCTGGTTGATGAAAATTCTACCAAAATCCAGGCCACTATAAGGAAGCAACTAATACACAAGTTTAAAGATCATCTTCTTGAAGGCAGTTGTTATAAGATGAGTTATTTTGCTGTTGTTTCAAACCAAGGCTCTTATAGAGCTACAAAGCATGAGTTCAAACTCATTTTTCTATTTCGTACAACAGTGACAACAATTCCTGATGATATAATACCCAAGTCTTGTTTTTCTATATATCCCTTTGAAGACATATTGCAAATGAGTCAGGATCATGACTATTTAGTTGATGTAATTGGTCTTTTGACATTGGTTGGGGAAGAGAAAAACTATGACAGGGATGGTAAAACGGTTAAGATGGTTGTTGTCGAACTTTCTTCACAAAAGATGATGCTGCGATGCGCATTATTTGGAGAGTACGTGGACCAGTTAAATGATTTTCTTGCTTCTGGTTATGTTGAGCAACCGGTTGTCATTGTTCAACTTGCTAAGATTAAACTTTTTCGAGGTCAACCTGGTCTCCAGAATGTTATGAAAGCAACAAAAATTTACTTTAATCCTGATTTGTCAGAAGTTATTGATTTTCGAAAAAGCATGGTCGAACAAGGAATTAATGGCACTCAACCTTTATTCATTGCGAATGAGGGAAAATCCGTTTCATTGGAGGATGACTTCATGCGCCTAACTAGGCGATCCACAATAGATCAATTACATGATAACAAAGAGGATGGGAGTTTTGTTATTATGGGTACTATCACTGATATTGTTGAAGAGGGCTGTTGGTGGTATTCCACTTGTGTGTGTGGAAAGGCAGTTTATCCTGAGTCTGGGGTCTATTTCTGTGATGTTTGCATGCATCATGTGACAAATGTGATTCCAAGGTTCAGACTTAAAGTAGCAGTTTCTGATCATACTGGACAGGGCATATTCGTTTTGTTTGATCGTGAAACAGCTTATTTGCTTAAAAAAGCATGTGCTGACCTTTTTAATGAAGTCCAAAAGGAGCCAACTGTTCTGTGTGGAGATAGCTATCCTATTACATTTAAAACTTTAGAGGGTAAAAAAGTTTTACTAAAAGTAGATACCAAGTCCCTTGGTATAGACAAATACTTTGGAACCTTTCGTGTAAAAAGGATATGTGATGACCCAACTATTATTTCTATGTTTGAGCTTGCTGAGAATGAGAACGAAGTGACACCTGTCAAGGATGCACATGTTCCTGGGATTGGTTTGGACATAGGTGAACCCTCTTATACACAGCCTACTTCAAAAGATGTTAAGCTTTCAGTCTTGGATAAGGATGAAAGTGTTCCTGGTCTTGATGACATTTCGATAGATATGGACGCTAATAGGAAATCTGTTGTTCCTCAAGTTTCTGGCGATAATGATGAGAATCAGGTCTTTAGTGATGAAGTTGGCTCATTGCTCAACTCAGGTGTTGAAGAAACTCAGGACTTCCTATCTCATCTTCTGGATAATTCGGACAACACTGATGTTTCTTTTATTTGCAATGATGTTGTGCGTTCCAAAGTAAAGAGAAACCTTGAATCAGATTTTCAGAAAGCCTTGGAGGAAACTGTTGGTCCTTCATCAAAGATGATCAAGATTGAAGATAATTTGGATGGATAG	1809	0.3814	MVDLMFERRGGVVDVIIPGYEEDFKCKIIPPREAWRIKVRVLRAWTVPSFGNADVPNSMELILVDENSTKIQATIRKQLIHKFKDHLLEGSCYKMSYFAVVSNQGSYRATKHEFKLIFLFRTTVTTIPDDIIPKSCFSIYPFEDILQMSQDHDYLVDVIGLLTLVGEEKNYDRDGKTVKMVVVELSSQKMMLRCALFGEYVDQLNDFLASGYVEQPVVIVQLAKIKLFRGQPGLQNVMKATKIYFNPDLSEVIDFRKSMVEQGINGTQPLFIANEGKSVSLEDDFMRLTRRSTIDQLHDNKEDGSFVIMGTITDIVEEGCWWYSTCVCGKAVYPESGVYFCDVCMHHVTNVIPRFRLKVAVSDHTGQGIFVLFDRETAYLLKKACADLFNEVQKEPTVLCGDSYPITFKTLEGKKVLLKVDTKSLGIDKYFGTFRVKRICDDPTIISMFELAENENEVTPVKDAHVPGIGLDIGEPSYTQPTSKDVKLSVLDKDESVPGLDDISIDMDANRKSVVPQVSGDNDENQVFSDEVGSLLNSGVEETQDFLSHLLDNSDNTDVSFICNDVVRSKVKRNLESDFQKALEETVGPSSKMIKIEDNLDG*	603

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo09g1748	602	CDD	RPA1_DBD_B_like	157	259	-	-
	Amo09g1748	602	SUPERFAMILY	Nucleic acid-binding proteins	289	442	IPR012340	-
	Amo09g1748	602	CDD	RPA1_DBD_C	296	437	IPR013955	-
	Amo09g1748	602	PANTHER	ANIMAL RPA1 DOMAIN PROTEIN	37	389	-	-
	Amo09g1748	602	Gene3D	-	131	267	IPR012340	-
	Amo09g1748	602	Pfam	Replication factor-A C terminal domain	307	396	IPR013955	-
	Amo09g1748	602	CDD	RPA1_DBD_A_like	36	124	-	-
	Amo09g1748	602	Pfam	Domain of unknown function DUF223	60	155	IPR003871	-
	Amo09g1748	602	PANTHER	REPLICATION FACTOR A 1, RFA1	37	389	IPR004591	GO:0003677\|GO:0005634\|GO:0006260\|GO:0006281\|GO:0006310
	Amo09g1748	602	Gene3D	-	26	129	IPR012340	-

Showing 1 to 10 of 13 entries

Previous1 2Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo09g1748	Amo-Chr9	70512268	70515505	Dispersed/Transposed

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo09g1748	30	366	Core DNA Replication Machinery Family	AT2G06510	23.481	7.00e-16	79.3

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo09g1748	-		-	ahf:112711209	1196.8

Showing 1 to 1 of 1 entries