Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g1746 ATGTTTATAGCTTGGATGTTAGCAAATAGGGTCTATCCCGAAGGGAAAGATTTGACATATGTTGAGTTCCCACGGCATTTTGTTTATATTGTTGATAATAGGGAATGGAAACCAAGACAAAGGGGATTTTCAATCGGTAGATTGAGTTTTGTTCCCCCAACTGCGGGTGAATTGTTTTATATGCGTTTGTTATTAAATGTACAAAGAGGGTGTACTAGCTTTAAGAGCATTAGAACAGTTAATGGGACTACTTATGATACATTTCAAGAAGCATGTTCTGCATTAGGATTGTTGACTGATGATAATGAGTTTGTTGAAGCTATTAAAGAAGCTGCTCTGTTAGGAACAGGCTTGCAACTCAGACGATTATTTGTAACATTATTATTGTCAGCTTCAATCAGTAGACCTTTATCTGTTTGGAATCAAACTTGGGTGTATTTATCTGATGACATTCTTTATCATAGAAGGATTCAGCTACAATATCCAGTTGTTAAGCAAATACATTGTGAGGGAACATTAAAGAAGATGCATACTTTATTTGATCCAATCAAGTGCATTACGCCTTGGAGAGAAACATGGAGGTTGAGAGTGAAAGTTGTTAGACTTTGGTTTGATGGAAACTCAGTATTAGAAGAAAATGATGATGGGTTGCTGCACCTTATACTGATGGACCAGAATCTGGATAAGATTGAAGCTATCATCAAAGAATGTTTCATATCGGATGTCGTTGATGTGTTAGATCAGGGAAGCGTTTACATCATGACAAATTTTTCTATTGTTCCAAATATTGGGTCCAACAGGGTAACTCAGCATCGTTTCAAGTTGCTATTTCAAGAAGAAACTACTATCACCCCAGGAGTTCCTTTTTCAGCTTTAAATGATGGTTTCAGTTTCTGTCCAATATCTGAAATACTAGAAAAAAGAGGTGACTCTGACTATTTAATAGATTTTGTTGGAGTTATCACTGGTGTGCGTCCGGATAAAGAAATTAATTATTGTGGAAAAATGATTAAAGTTGTCATCTTGGAGCTTTATGCTGATGGGAAGAAGATTCAGTGCAATGTGTTTGGAAAAAGTTGTGAATGTTTGGAGTTTTCTATGCTAACTAAATTTCAGAGACCTCCTATAATTATTCTGCAATCTTTTAAAATCAAAGTTTATGGAGATCGAGTTTCTTTGCAAAATGTATTAAATATATCAAATATCCTTATCAACCCTGATTTGCAAGAAACTGTGCATTTTCTTGAAAGAATGAATGTAGCAAGTTGTCATTTTAATATGTTTACAAAGAATGAGCATGGTTCTTTAGTTTCAAACATTGATGATGATTCCTTGAATTGGAGATGCATTCGCACAATTCAAGTGATTCAAGAGAATACTGAGGATGGTTTATTCTTTGTTGTAGTTAAAGTAAAAGAAATCTTTGGTGGTGCTAATTGGTGGCTGTTTTCATGTGTTTGTGGACATAGTCTTGATCAAGTGGATAATGTTTTCCATTGTCAAGTTTGTGACAGAGATGTTGACAATGCTATTGCAAAGTATAGAGTTAGGATTGTTGTTGAAGATAGAAATGCAACTGCTGTCTTTGTTCTTATGGATTCTGCTGCAACTAAATTGTTTGGAAAGACATGTTCTTCTGCATTGATGGATCATGAGAAAGAACTCAATGATTTCAGTTATGCATTGTATCCTACCTTTTTTGATCTTTTTATTGGGAAAGAGTTGATTTTCAAAATTGACTGCAAAAAAGTAAGCAACGAGCCATACACTGGGACATTCAAAGTTATTTCAATCTTGAATGAAAATCTACCACATGTTGAGTTGAAGCTTGATCCAAATATAAATAGTGGTATTCAAGCACCTATCTATACTCCCATATGTGAAGATTATCATCACTATGCAGAAGTTGAAAAATATAAAAGTCGAATTGCATGCGATGCTTTTATTCATGCTTGCAATGTTGATGACATGCTGCTTGATCATTTTGCTGTGCGTTACTATTGTTCTACTCCAGAGCCACTTGAGTGTGTTGACGCTATTCCAAGCTATCGGTTAAAGGTGGTGATTTCTCATGCAAGTGGTAGCAATGTATTCATTTTGCATGATCGTGAAGTTAGGCATATTATCAAGAAAGATTGTGGTGATTTGTTGAATGAAAAATCAAATTTCAAAGAGACTATTTATGAGCATAGAGTCCCGCCAACCATGTCTGACTGTTTAATTGGGAAGAAGATGGTTTTAATGATAGATCCTAGACCTGTTGGTTATGAGTATAACACAACTGTGTATATAGTGCATCGTATTTGTGATGATGTTTCATTGGTCAATCTCTTTGAACGTGCTTCTCCAATGCATGATAAAAAGTCAAGTAGTTTTCAAATTGAATTATCGGATTCTGTTCATGGTGCCAAAGTTGTTAGACCTTCAACCTCAGGAAGGTTAATAGCTGATTCATTCCAACTACGAAATCAGAAATTATATGATAAGATATCAGCGACTTCTCTTTAA 2508 0.3501 MFIAWMLANRVYPEGKDLTYVEFPRHFVYIVDNREWKPRQRGFSIGRLSFVPPTAGELFYMRLLLNVQRGCTSFKSIRTVNGTTYDTFQEACSALGLLTDDNEFVEAIKEAALLGTGLQLRRLFVTLLLSASISRPLSVWNQTWVYLSDDILYHRRIQLQYPVVKQIHCEGTLKKMHTLFDPIKCITPWRETWRLRVKVVRLWFDGNSVLEENDDGLLHLILMDQNLDKIEAIIKECFISDVVDVLDQGSVYIMTNFSIVPNIGSNRVTQHRFKLLFQEETTITPGVPFSALNDGFSFCPISEILEKRGDSDYLIDFVGVITGVRPDKEINYCGKMIKVVILELYADGKKIQCNVFGKSCECLEFSMLTKFQRPPIIILQSFKIKVYGDRVSLQNVLNISNILINPDLQETVHFLERMNVASCHFNMFTKNEHGSLVSNIDDDSLNWRCIRTIQVIQENTEDGLFFVVVKVKEIFGGANWWLFSCVCGHSLDQVDNVFHCQVCDRDVDNAIAKYRVRIVVEDRNATAVFVLMDSAATKLFGKTCSSALMDHEKELNDFSYALYPTFFDLFIGKELIFKIDCKKVSNEPYTGTFKVISILNENLPHVELKLDPNINSGIQAPIYTPICEDYHHYAEVEKYKSRIACDAFIHACNVDDMLLDHFAVRYYCSTPEPLECVDAIPSYRLKVVISHASGSNVFILHDREVRHIIKKDCGDLLNEKSNFKETIYEHRVPPTMSDCLIGKKMVLMIDPRPVGYEYNTTVYIVHRICDDVSLVNLFERASPMHDKKSSSFQIELSDSVHGAKVVRPSTSGRLIADSFQLRNQKLYDKISATSL* 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g1746 835 SUPERFAMILY Nucleic acid-binding proteins 296 422 IPR012340 -
Amo09g1746 835 SUPERFAMILY Nucleic acid-binding proteins 180 289 IPR012340 -
Amo09g1746 835 CDD RPA1_DBD_B_like 316 418 - -
Amo09g1746 835 Gene3D - 439 605 IPR012340 -
Amo09g1746 835 Gene3D - 629 776 IPR012340 -
Amo09g1746 835 Gene3D - 293 429 IPR012340 -
Amo09g1746 835 Pfam Domain of unknown function DUF223 220 314 IPR003871 -
Amo09g1746 835 PANTHER UNCHARACTERIZED 3 160 - -
Amo09g1746 835 PANTHER ATP-DEPENDENT DNA HELICASE 3 160 - -
Amo09g1746 835 SUPERFAMILY Nucleic acid-binding proteins 458 600 IPR012340 -
Amo09g1746 835 CDD RPA1_DBD_A_like 194 283 - -
Amo09g1746 835 Gene3D - 180 286 IPR012340 -
Amo09g1746 835 CDD RPA1_DBD_C 465 614 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g1746 Amo-Chr9 70498092 70506798 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g1746 182 562 Core DNA Replication Machinery Family AT5G08020 19.598 1.25e-07 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g1746 - - ahf:112695694 479.174