Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g1702 ATGTCCATAAACGAGGTTGATGTGAAGAATGATTCTGATAATGATTTGGGTGATGATTTCGATTATCAACCGAATGTAGAAGATGATGCTGAAGACGACGATGTGGATTCGCTGGATTCTACTAGCAAGAGTGAAGAAGTTTGTGGTGTAAAAAGAATAGCAGATTTAATGGTGGAGGATATTTGGAACCTGGAGTTTAGGACAGAGGATGAGGCTTGCCAATTTTATAACACTTATTCTTGTTGGCATGGATTTGTAATGAGGAAGGACGACATGGTTAGGGATAATCAAGGTAGAATCATTAGCAGGCAACTTGTTTGCAACAAAGAGGGGTGGAGGAATGTGAGGTATCTTGATCTGGATGATAGATCAAGGGAGGCAAGGTCACTAACGCGAACCAAGTGTCCAGCTCGGCTTAGGACGTACGAAACTCGTGCGATGTGGTCCCATTGTTTCCTCCGGGATAAGTTTTTCGGTTACATAAGGACGACATCACAATACGAAGGTATAAATTCTCTCATCAGATTTTATGTTAATCGCAAGAACACCCTCATTGATTTCATGCATAACCTGGATAGGGCCTTAAAGGAGTATAGAAACAATGAATTAATAGCTGACTTTAAGTCTCAGCTCTCAGAGCCAGTGATGATTACGTCGTTGGAGGTATATGAAAGATCTGCATCATGTTATTTCACGCGAAACATTTTCAAGGAAATTCGTAATGAGATTCAGAGGGCAGGGGCTTTGAATATCAAGGTACTAAGCACAACCTTGGACAAGGTCGAGTTCAGTGTGACTGCTCTCGGAGACCCGGCCAAAGATCGACGGGTGGAAGTCGATAGAGGTAAAAATCTGTTCTCGTGCTCGTGCAAGATGTTTGAATCACGTGGTATTCCGTGTAGTCATGTCTTCTGTGCCATGAAGTTCGAAAACATACTTGAGTTTCCAGATTCGTTGATCTACAAAAGGTGGACAAAGAATGCAAAGAACGAATTTATTATCACAGAAATGCCTGTGAATGATGACATCGAAAGGGTCTTAAAGTTTCGAGTTGGTGCATTAGCATCGAATTGCAACAAGCTGTGTGATATTGCTTGTAAGGATCTTGCAGACTTTGATGAAGTCCAGTCTGAACTTGTCAATTTAGTTATCCACCTGCAGTCACGCAAACAAGGTAAGTCAACTCCTAATGTTAACGTGGAAGGCATCAACGATCCCTTTGTTGTCAAAAGCAAAGGAGCCCCTTCCAAGAGGTCTTCTTGGAGGAAGAAGAGAGCATGCTCTAATTGCCACAAGTACAGTCATTACTACAAGCGCTGTCCAGATCTGATGCAGCATAGTGTGGAAGGTAAACCTCACAATCGATCAGACGGCAATGCATCAGCCAAGGACTCAGTTTTTAGTCCAGAAAGGTTTGGTAATTCTTCGAGGTCGATCTCAGTTAAGTCCGAACACCACTTAGGACCTAAGACGAAGCCTTTTAAAAAGGGTGGAACAAGGAAGTTTACGGCGACGGGTATGAGGAACCGGAAGGGTAAAGATAACACTTTTGATGAGCGGAGCCTCCATGAAAGCAGTGAATCCATTGACATCGTGTCCACGAATGGTTTTTTTAACAAAAATGTCTACTTGTTAACACAGGTAAAGGAGCCACAGCAGGACAAGAGACATTCATTCATGAACTATGAATGCGTTAATGATGTCATTGATGAGAAATGTGACACACCACATGTGCAGATCGATGTCCGAGATCCGTTACCATCGTCACTGCCTTGTGGCAACAAACAAGGA 1791 0.4271 MSINEVDVKNDSDNDLGDDFDYQPNVEDDAEDDDVDSLDSTSKSEEVCGVKRIADLMVEDIWNLEFRTEDEACQFYNTYSCWHGFVMRKDDMVRDNQGRIISRQLVCNKEGWRNVRYLDLDDRSREARSLTRTKCPARLRTYETRAMWSHCFLRDKFFGYIRTTSQYEGINSLIRFYVNRKNTLIDFMHNLDRALKEYRNNELIADFKSQLSEPVMITSLEVYERSASCYFTRNIFKEIRNEIQRAGALNIKVLSTTLDKVEFSVTALGDPAKDRRVEVDRGKNLFSCSCKMFESRGIPCSHVFCAMKFENILEFPDSLIYKRWTKNAKNEFIITEMPVNDDIERVLKFRVGALASNCNKLCDIACKDLADFDEVQSELVNLVIHLQSRKQGKSTPNVNVEGINDPFVVKSKGAPSKRSSWRKKRACSNCHKYSHYYKRCPDLMQHSVEGKPHNRSDGNASAKDSVFSPERFGNSSRSISVKSEHHLGPKTKPFKKGGTRKFTATGMRNRKGKDNTFDERSLHESSESIDIVSTNGFFNKNVYLLTQVKEPQQDKRHSFMNYECVNDVIDEKCDTPHVQIDVRDPLPSSLPCGNKQG 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g1702 597 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 57 139 IPR031052 GO:0006355
Amo09g1702 597 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 141 383 IPR031052 GO:0006355
Amo09g1702 597 MobiDBLite consensus disorder prediction 507 521 - -
Amo09g1702 597 SMART 26again6 286 313 IPR006564 GO:0008270
Amo09g1702 597 MobiDBLite consensus disorder prediction 459 482 - -
Amo09g1702 597 Pfam SWIM zinc finger 287 303 IPR007527 GO:0008270
Amo09g1702 597 MobiDBLite consensus disorder prediction 1 42 - -
Amo09g1702 597 Pfam FAR1 DNA-binding domain 74 141 IPR004330 -
Amo09g1702 597 ProSiteProfiles Zinc finger SWIM-type profile. 275 311 IPR007527 GO:0008270
Amo09g1702 597 MobiDBLite consensus disorder prediction 447 521 - -
Amo09g1702 597 PANTHER OS03G0181600 PROTEIN 57 139 - -
Amo09g1702 597 PANTHER OS03G0181600 PROTEIN 141 383 - -
Amo09g1702 597 MobiDBLite consensus disorder prediction 17 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g1702 Amo-Chr9 67093547 67096481 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo09g1702 FAR1 1.1e-10 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g1702 - - aip:107640898 802.742