Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g1670 ATGGAACAGCTGATATTGGCTGCAGAATCTGACATCAAAGAGGACTCCCCTTTGAGGCCAAAGCCAAAAAGTAATGATGCACCTGAGCCTTCTGGCAGTCCTAGAAGTAGAATGGTCTCTGCTAGATGGGATCCAGGTGAGGCATGCCGACCCATAATTGATGAAGCACCCGTGTTCTATCCTACTAATGAGGAATTTGAAGACACACTTGGTTACATAGCGAAGATACGCCCCCAAGCTGAACCCCATGGAATATGCAGGATTGTCCCTCCTGCTTGCTGGGTGCCACCTTGCCCTCTGAAGGAGAAAGATATATGGGAAAATGCTAAATTTTCCACCCGTATTCAGCAGATTGATTTGCTTCAAAACAGGGAGCCCATGAAAAAGAAAAAAAGGGGAAGGAAACGGAAACGTAGAAATCACTCCAAAATGGGAACATGCAGGAGACTGGCCAATTCAAGTTCAGGAGCTAATAATGCTTCTGAACCTGATGAGAAATTTGGATTCCAATCAGGGTCAGACTTCACATTTAAAGACTTTCAGCTGTATGCTAATTATTTTAAGGAATGCTACTTTCGGTTGAAAGATCCTGGTGAAGAAGAAAAATTTAGCAATGATAGCTACCAGAGGAGATGGCAGCCCTCAGTGGAGGAAATTGAAGGTGAATATTGGCGAATAATTGAGCAACCAACTGATGAGGTTGAGGTGTATTATGGTGCAGACTTGGAAACTGGATCAGTCGGAAGTGGTTTTCCCAAATCATCATCCTTAACTAAGAGTGACTCGAATCAATATGCCCTCTCTGGTTGGAATCTCAATAATTTTGCGCGACTACCAGGTTCGGTACTTAGTTTTGAAGGAAGTGACATCTCAGGAGTTCTTGTGCCGTGGCTATATGTTGGCATGTGCTTTTCATCATTTTGCTGGCATGTTGAGGATCATCACCTTTATTCTCTTAATTACCTGCACTGGGGTGACCCAAAAGTATGGTATGGGGTACCTGGAAACCATGCCTCAGCTTTGGAAGACACAATGAGGAAGCACTTACCTGATTTATTTGAGGAACAGCCAAATCTACTCAATGATCTGGTTACACAGTTATCTCCTTCGATTCTTAAATCTGAGGGTGTGCCTGTATATCGTACTGTCCAGCACTCTGGGGAGTTTGTTATTACTTTTCCAAGGGCATACCACTCTGGCTTCAATTGCGGCTTCAACTGTGCTGAGGCAGTGAATGTGGCTCCTGTTGATTGGCTAATGCATGGCCAGAATGCTGTTGAGCTTTATAGCTTGCAGGGTCGTAAGACATCCTTGTCGCATGACAAGCTGTTATTTGGATCAGCACAGGAAGCTGTACAGGCCCTCGCAGAACTAGCTCTTCATGGAGAAGAAACTCCAAAATGTTTGAAATGGAGAAGTGTCTGCGGGAAAGAGGGAGTTCTAACAAAGGCCATTAAGACAAGGATAAAGATGGAAGAAGAGAGGCTGGGATGTCTTCCAACACATTTGAAGTTGCTAAAGATGGACAAAGACTTCGATTCTTATGATGAAAGAGAATGCTTCTCTTGCTTCTATGACTTGCATTTATCTGCTGTGGGATGCGAGTGCTCTAGGGACATATATTCTTGTCTTATGCACTCAAAGTTTTTATGCTCTTGCGCAATGGATAAAAGATTTGTTCTTTTTCGTTATACCATAGATGAACTAAAATCTTTGGTTGAAGCATTAGAAGGAGAATCACATGCTATTAAGGTATGGGCAAATAAAAGGCTTGGAATGGTATCTACTGTTTCCAGTGAGGTTTGCATGTATGAACCAGATATGGAGAAAGATATGTACAAAGCAAAGAATCCCAAAGAAGAGGAGACCTCGGTAATAGGAGCCACGAATAACTCAAATTTAAATATACCTAGCAGGCCTCATAGTCATGTCACTTCAGAGATAGTTCAGTCAGAGTCTCACGATGTAACTTCTGGTGCATCATATGGAATTATAGAAAATCATAATCATAGTATTGATAAAAAGTTGGCCGCAGATAACGGACATAAAGTGGACCAGGAAGGTTCTTTGGATTTGAATGTTGAAGCCGTATCAGATGGAAATGAAAATAATTTGCTGCTTAAGAGTTTCTTAACAGAGGAAAAATTATGTTGCTCCGGCTCTGGAACAAAACAAGAAAACATTGGGCTTGCTGGCGAGCATAACCTATCACAGTTTTGTGTTCTGCAGACAGAACTTTCATCATGTTCAAGGGTTGTTGCTTATTCTGGTCCATTTAATGGTGGAAAATTTGGGATAGATTCAAATTCTGGAAAGCATCCTAACTGCATGGTTAAAAGGGAAATCATTGACTCGATGAATAGAAGTATATCTTTGAGTGATGAAAGCCATCTAATGCAAGTGTTTGGTACTACTGTGAAGCTTATAAGTTTGGGATCTGTTGCTTATGGAAAACTATGGTGCACTAAGCAGGCAATATATCCAAGAGGATTCAAGAGTCTAGTTAGCTTCTTTAGCATTCTTGATCCAGCAAGAATATGTAGCTATATTTCTGAAGTTGTTGATGCTGGATTTCTTGGACCTCTTTTCAAGGTTACCCTGGAAGGTCATCCAAATGAGGTGTTCACTGATACCACAGCAGACAAGTGCTGGGAATCAATTCTAAAGAGACTACATGATGAAATCGTTAGGCAAAGGAGTCTAGGTGAACTAGAACTTCCTCCGATAGAGCTTTTGAAAAGCATTAATGGTCATAGAATGTTTGGCTTCCATTTGCCATCTGTTGTTCAGGCCATTGAAGCGCAAGATCTCACTCATCAGTGTGCAGAGTACTGGAACCACAAAGGTGCCCTCACTTCACAGGGCCGCGCGATTAAAAAGTTCAAAGATGGTTCAGGTAGCTCTTCAGGCAATGGCAATACCAAAGTTTTTGGCATCAATTTAATTAAGCAGGAAGATGATGACATAGGTGGAAGTTGTCATTCCCTTGGAGAGATGCAATCAATATTACAGGGATTGCTAAAAAGGGCAAGTGCTGATGAGTTAAGCGCAATGCGTAAGTTATTCAGCTCGGATGCTTTGTGCTCCCAGTGGAGAATGACATTCTTAGCCCTGATGGAGGAGATCAATAAAGCTGGTAGATAA 3144 0.4186 MEQLILAAESDIKEDSPLRPKPKSNDAPEPSGSPRSRMVSARWDPGEACRPIIDEAPVFYPTNEEFEDTLGYIAKIRPQAEPHGICRIVPPACWVPPCPLKEKDIWENAKFSTRIQQIDLLQNREPMKKKKRGRKRKRRNHSKMGTCRRLANSSSGANNASEPDEKFGFQSGSDFTFKDFQLYANYFKECYFRLKDPGEEEKFSNDSYQRRWQPSVEEIEGEYWRIIEQPTDEVEVYYGADLETGSVGSGFPKSSSLTKSDSNQYALSGWNLNNFARLPGSVLSFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKVWYGVPGNHASALEDTMRKHLPDLFEEQPNLLNDLVTQLSPSILKSEGVPVYRTVQHSGEFVITFPRAYHSGFNCGFNCAEAVNVAPVDWLMHGQNAVELYSLQGRKTSLSHDKLLFGSAQEAVQALAELALHGEETPKCLKWRSVCGKEGVLTKAIKTRIKMEEERLGCLPTHLKLLKMDKDFDSYDERECFSCFYDLHLSAVGCECSRDIYSCLMHSKFLCSCAMDKRFVLFRYTIDELKSLVEALEGESHAIKVWANKRLGMVSTVSSEVCMYEPDMEKDMYKAKNPKEEETSVIGATNNSNLNIPSRPHSHVTSEIVQSESHDVTSGASYGIIENHNHSIDKKLAADNGHKVDQEGSLDLNVEAVSDGNENNLLLKSFLTEEKLCCSGSGTKQENIGLAGEHNLSQFCVLQTELSSCSRVVAYSGPFNGGKFGIDSNSGKHPNCMVKREIIDSMNRSISLSDESHLMQVFGTTVKLISLGSVAYGKLWCTKQAIYPRGFKSLVSFFSILDPARICSYISEVVDAGFLGPLFKVTLEGHPNEVFTDTTADKCWESILKRLHDEIVRQRSLGELELPPIELLKSINGHRMFGFHLPSVVQAIEAQDLTHQCAEYWNHKGALTSQGRAIKKFKDGSGSSSGNGNTKVFGINLIKQEDDDIGGSCHSLGEMQSILQGLLKRASADELSAMRKLFSSDALCSQWRMTFLALMEEINKAGR* 1048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g1670 1047 SMART cupin_9 267 430 IPR003347 -
Amo09g1670 1047 ProSiteProfiles JmjN domain profile. 56 97 IPR003349 -
Amo09g1670 1047 MobiDBLite consensus disorder prediction 127 145 - -
Amo09g1670 1047 Gene3D Cupin 41 414 - -
Amo09g1670 1047 Gene3D - 801 942 - -
Amo09g1670 1047 SMART JmjN_1 55 96 IPR003349 -
Amo09g1670 1047 MobiDBLite consensus disorder prediction 1 42 - -
Amo09g1670 1047 ProSiteProfiles FYR domain FYRC motif profile. 858 948 IPR003889 GO:0005634
Amo09g1670 1047 SMART fyrn_3 812 856 IPR003888 GO:0005634
Amo09g1670 1047 ProSiteProfiles JmjC domain profile. 267 430 IPR003347 -
Amo09g1670 1047 MobiDBLite consensus disorder prediction 124 165 - -
Amo09g1670 1047 SUPERFAMILY Clavaminate synthase-like 267 453 - -
Amo09g1670 1047 ProSiteProfiles FYR domain FYRN motif profile. 798 856 IPR003888 GO:0005634
Amo09g1670 1047 PANTHER LYSINE-SPECIFIC DEMETHYLASE 10 1046 - -
Amo09g1670 1047 MobiDBLite consensus disorder prediction 7 22 - -
Amo09g1670 1047 SMART fyrc_3 862 954 IPR003889 GO:0005634
Amo09g1670 1047 MobiDBLite consensus disorder prediction 146 165 - -
Amo09g1670 1047 Pfam F/Y rich C-terminus 860 946 IPR003889 GO:0005634
Amo09g1670 1047 Pfam C5HC2 zinc finger 520 572 IPR004198 -
Amo09g1670 1047 Pfam jmjN domain 57 90 IPR003349 -
Amo09g1670 1047 Pfam JmjC domain, hydroxylase 297 413 IPR003347 -
Amo09g1670 1047 Pfam F/Y-rich N-terminus 805 853 IPR003888 GO:0005634
Amo09g1670 1047 PANTHER DEMETHYLASE JMJ14-LIKE PROTEIN, PUTATIVE-RELATED 10 1046 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g1670 Amo-Chr9 66024142 66031362 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g1670 64 1036 JUMONJI Transcription Factor Family AT4G20400 47.416 0.0 839
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Amo09g1670 JmjC 1.7e-46 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g1670 - - gmx:100801775 1474.14