Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g1650 ATGGAAGTTATGCCTTTTTGTGTCACATTCACTAAATTTCATACATTTTCCTTTCTGAAACCAAACGTAACAACAACCGAAATTCAGGGCCTTTCACTACCCAATAATAGGAGCAAACATTGCAATCTTTATTCATTTTCTTCTTCATCTTCAAGAAGTATAGCAGCAACAGCAACACTATACCCTTCTGCCACACAGAAGAACCGCTACTGGATGGTACTCATGGAGCCTCCACCTCATGGTGTCACCTCCAAGTCACAACTCATCAATTATTACGCCAACACTCTACACAAAGTCCTTGCCAGTGAGAGAGATGCTCAAATGTGTATATATGATGCTTCCTGCGATACACACTTTGGTTTCTGTTGTGACATTGATCCACAAATAACCTCCCAACTCACAAGTTTACCGGGGGTCTTGTTGGTTAGGCCTGATCCGGATTTCAGTTCTTCGGAAAAGGACTATAGTCTATCAAGTGGTCAAGAAGGTCTGCTATCGAATTCAAAACTACAATTTGAAACTAACATGTTATTCTTTCTTGAGAATTCAAAGCATTGGCTTGTTAGAATTGATAAACCTGCTGTTGGGATTGTTACAAAGGCTCAGATTGTCGATTATTTTGTTCAAATATTGACCAAGGTGATGGGAAACGAAAAGGATGCTCAGATGTGCATATATCATGTTTCCTGGAAAAAAATATTTGGTTTTTGCTGTGAACTTGATGACGACTGTGCACAGGAGTTAGCTGGTGTGCCTGGTGTCTTATCAGTTCAACCAGATAATAATTTTGAGTCAGCAAATAAGGATTATGAAGGTAATAACTTAGAAAACAGTTTGAGTGTGCAAAAATCTTTTGAAACAAGTCAGGCAGCTCCCCTGCGAACGAAAAAGCTTTTTGTGACAGGGCTATCGTTTTATACATCTGAGAAAACCTTACGTGCAGCATTTGAAGGCTTTGGTGATCTTGTTGAAGTCAAAATTATTATGGATAAAATTTCCAAAAGGTCCAAGGGTTATGCATTTGTTGAGTACACCACGGAGGAGGCTGCAAGCGCAGCATTGAAAGAGATGAATGGCCAGATTATTAATGGATGGATGATAGTAGTGGATGTTGCCAAGACTAACCCGCCAAGGCACAACAGGGGTCATGTCAGGCCATCAGTTTGA 1167 0.4019 MEVMPFCVTFTKFHTFSFLKPNVTTTEIQGLSLPNNRSKHCNLYSFSSSSSRSIAATATLYPSATQKNRYWMVLMEPPPHGVTSKSQLINYYANTLHKVLASERDAQMCIYDASCDTHFGFCCDIDPQITSQLTSLPGVLLVRPDPDFSSSEKDYSLSSGQEGLLSNSKLQFETNMLFFLENSKHWLVRIDKPAVGIVTKAQIVDYFVQILTKVMGNEKDAQMCIYHVSWKKIFGFCCELDDDCAQELAGVPGVLSVQPDNNFESANKDYEGNNLENSLSVQKSFETSQAAPLRTKKLFVTGLSFYTSEKTLRAAFEGFGDLVEVKIIMDKISKRSKGYAFVEYTTEEAASAALKEMNGQIINGWMIVVDVAKTNPPRHNRGHVRPSV* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g1650 388 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 296 374 IPR000504 GO:0003723
Amo09g1650 388 SUPERFAMILY RNA-binding domain, RBD 288 384 IPR035979 GO:0003676
Amo09g1650 388 Gene3D - 265 387 IPR012677 -
Amo09g1650 388 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 180 264 IPR037045 -
Amo09g1650 388 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 52 149 IPR037045 -
Amo09g1650 388 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 298 364 IPR000504 GO:0003723
Amo09g1650 388 PANTHER ORGANELLE RRM DOMAIN-CONTAINING PROTEIN 1, CHLOROPLASTIC 42 386 - -
Amo09g1650 388 SMART rrm1_1 297 370 IPR000504 GO:0003723
Amo09g1650 388 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 42 386 IPR039206 GO:0016554
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g1650 Amo-Chr9 65010526 65014687 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g1650 296 378 C2H2 Transcription Factor Family AT2G19380 33.735 3.66e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g1650 - - gmx:100791652 515.383