Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g1558 ATGTCTACCGCCGCAGCACAGCCCAAGACTAAGAAAACGGCTGCGTCCAAGAAGCCTCCTTCTCACCCCACCTTCGCCGAGATGATAACGGATGCGATTTCGAGTTTGAAAGAGAGAACTGGTTCAAGCCAATATGCGATAACGAAGTTCATCGAAGAGAAGCACAGGAATCTTCCACCAACCTTCCGGAAGCTTCTTCTCCACAACCTCAAGAAATCCGTCGCTGCTGGAAAGCTCGTGAAAGTGAAGAATTCATTCAAACTTGCGCCGAAAGCTGCTTCTCCTCCCGCTCCAGTGAAGGCTCCAGCGAAGGCTTCTTCTGTTGCCGCCGCCAAGCCTAAAGCCGCGGCGGCTTCCAAGCCTGGTCCTAAGCCTGTGTCCAAACCTAAAGCCAAACCAGCTGCCATTACGAAGAAGGCCGCTGCCAAACCTAAAGCCAAATCTGCTCCTGCTTCTGCAAAGCCGAAGCGGAAGCCAAAAGCGAATGCTCCGGCGAAGAAGGTTGCTGCCAAGCCGGTGAAGAAGATGCCAGTTAAAAAGCCGAAAAGCGTGAAGTCTCCAGCGAAGAAAGCAGCGGCGAAGAAGACTAAGAAGTGA 597 0.526 MSTAAAQPKTKKTAASKKPPSHPTFAEMITDAISSLKERTGSSQYAITKFIEEKHRNLPPTFRKLLLHNLKKSVAAGKLVKVKNSFKLAPKAASPPAPVKAPAKASSVAAAKPKAAAASKPGPKPVSKPKAKPAAITKKAAAKPKAKSAPASAKPKRKPKANAPAKKVAAKPVKKMPVKKPKSVKSPAKKAAAKKTKK* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g1558 198 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 21 90 IPR005818 GO:0000786|GO:0003677|GO:0006334
Amo09g1558 198 MobiDBLite consensus disorder prediction 172 198 - -
Amo09g1558 198 SUPERFAMILY "Winged helix" DNA-binding domain 18 101 IPR036390 -
Amo09g1558 198 PANTHER HISTONE H1 3 195 - -
Amo09g1558 198 Pfam linker histone H1 and H5 family 22 89 IPR005818 GO:0000786|GO:0003677|GO:0006334
Amo09g1558 198 MobiDBLite consensus disorder prediction 1 24 - -
Amo09g1558 198 Gene3D - 16 152 IPR036388 -
Amo09g1558 198 PRINTS Histone H5 signature 35 52 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Amo09g1558 198 PRINTS Histone H5 signature 8 29 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Amo09g1558 198 PRINTS Histone H5 signature 176 195 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Amo09g1558 198 PRINTS Histone H5 signature 118 132 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Amo09g1558 198 PRINTS Histone H5 signature 154 171 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Amo09g1558 198 CDD H15 19 88 IPR005818 GO:0000786|GO:0003677|GO:0006334
Amo09g1558 198 SMART h15plus2 19 85 IPR005818 GO:0000786|GO:0003677|GO:0006334
Amo09g1558 198 MobiDBLite consensus disorder prediction 89 198 - -
Amo09g1558 198 MobiDBLite consensus disorder prediction 150 164 - -
Amo09g1558 198 PANTHER LINKER HISTONE H1 AND H5 FAMILY PROTEIN 3 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g1558 Amo-Chr9 59227782 59229155 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g1558 23 88 Single Myb Histone (SMH) Gene Family AT1G72740 36.364 7.54e-08 49.3