Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g1547 ATGGTGACGAACACCAACAAGGTCGTGAAAGTGAAGAGAGACACGCTAAGAGCATGCATGACATGCCCTCTTTGCAATAACCTCCTCAAAGATGCCACCACTATCTCTCTCTGCCTCCACACATTTTGTAGGAAGTGTATATATGAGAAGCTCTCGGATGAGGAGGTGGATTGCTGTCCTGTGTGCAACATTGATCTAGGCTGCCTTCCGGTGGAAAAACTCAGGGCAGACCATAATTTACAAGACATAAGGGCTAAAATATTTCCTTATAAGAAAAGGAAGACCAAGATCAAGGAACCAGAAGTTTTTCCTTCAGTATCCCCACCTGCAAAGAGGAAGGAAAGATCACTTTCATCGTTGGTAGCTCCGAAAGTTTCGGCACAAACAGGCCTTACAGGAAAGAGGACAAAAACTGTGTCAAGAAAGGCTGCTGCATTACGTGGGTGCAGTTTTATTCTTGAAGAATCCATAAAAAAGGAAGAAACAAATGGTGGAGATAACATGGATTCGTCAACGCCTGAGCCTTCTAAGAAAAACAAGTCCAGCGAAAGCACGGAGAACAGTGTAGAACTTACAGAAGGTAAGGCTGATCTCTGGACACCGTTAAACTGCCTTGTTGAAGCCGCCAACAGAACAAAGTCCTCCAGGTCAAATTCACAAGCAGTTCCCCCTGCCAAATCGGACTCTCCAACTACTGCACATGATGCACGAGATATGTCCGAAATCACAAACAAAGCCGAGCTACCTGCTTCAGGTCAGAATGAAATAGGCATTCCAAAATCTAAGAGTAAGGATAATGGACACAAAGCAAAATTTGGTGATGGCAAGGATGGCAACAGCGTGCCTTCGGGACCAGTGAAGCGAAGAAGGTTGCGGCCTTCTGGTCAGAAAAAGGTTGCGCCGACTGAGGGGTCTACCTCAGCCCAAGTCATGCTAGATGCAACAAGGGGATATTGCAACAGAAAGAACACCCCTATTTGGTTTTCATTAGTTGCTTCAGAGGACCAGAAAGGAGATGTTCCGTTGCCACAGGTCTCAGCATGTTACTTAAGAATAAAGGATGGCACTGTGCCTGTTTCGTTTATTCAAAAGTACCTTGTGAAGAAACTTAATCTTGCCAGTGAAGCAGAGGTAGAAATAATGTGCCGGGGTCAACCAGTGCTGCCATCTCTGCAACTACACAACCTTGTAGATTTGTGGTTCAGAACAGCATCAACCTCAAAAAAGATACCAGCATCTGTAGGATCATCAGCCAAGGATTTTGTTATGGTTTTATCATATTGTCGAAAGGCCTTGCCACCTTGA 1305 0.4498 MVTNTNKVVKVKRDTLRACMTCPLCNNLLKDATTISLCLHTFCRKCIYEKLSDEEVDCCPVCNIDLGCLPVEKLRADHNLQDIRAKIFPYKKRKTKIKEPEVFPSVSPPAKRKERSLSSLVAPKVSAQTGLTGKRTKTVSRKAAALRGCSFILEESIKKEETNGGDNMDSSTPEPSKKNKSSESTENSVELTEGKADLWTPLNCLVEAANRTKSSRSNSQAVPPAKSDSPTTAHDARDMSEITNKAELPASGQNEIGIPKSKSKDNGHKAKFGDGKDGNSVPSGPVKRRRLRPSGQKKVAPTEGSTSAQVMLDATRGYCNRKNTPIWFSLVASEDQKGDVPLPQVSACYLRIKDGTVPVSFIQKYLVKKLNLASEAEVEIMCRGQPVLPSLQLHNLVDLWFRTASTSKKIPASVGSSAKDFVMVLSYCRKALPP* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g1547 434 PANTHER UBIQUITIN PROTEIN LIGASE DRIP2, PUTATIVE-RELATED 6 432 - -
Amo09g1547 434 ProSiteProfiles Zinc finger RING-type profile. 22 63 IPR001841 -
Amo09g1547 434 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 6 432 IPR044807 GO:0004842
Amo09g1547 434 MobiDBLite consensus disorder prediction 246 260 - -
Amo09g1547 434 SUPERFAMILY RING/U-box 16 81 - -
Amo09g1547 434 SMART ring_2 22 62 IPR001841 -
Amo09g1547 434 Pfam Zinc finger, C3HC4 type (RING finger) 22 62 - -
Amo09g1547 434 Gene3D - 307 410 - -
Amo09g1547 434 ProSitePatterns Zinc finger RING-type signature. 38 47 IPR017907 -
Amo09g1547 434 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 108 IPR013083 -
Amo09g1547 434 MobiDBLite consensus disorder prediction 210 306 - -
Amo09g1547 434 MobiDBLite consensus disorder prediction 157 195 - -
Amo09g1547 434 MobiDBLite consensus disorder prediction 261 275 - -
Amo09g1547 434 MobiDBLite consensus disorder prediction 210 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g1547 Amo-Chr9 58176170 58181399 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g1547 8 353 C3H Transcription Factor Family AT2G30580 43.288 2.04e-80 250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g1547 K16277 - gmx:100783999 673.7