LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo09g1514	ATGCTTACTCTAAAACTATTTGTTTACACGGTAGTGATATTCTTTGTTTCTCTTTTCATCTTTGGATTCCTATCTAATGATCCGGGACAATTCCATACTCGATCTCATAGATACATATGGATACATATAGAATTCTGTGGAAAGCCGTATTTGATGAAAGTCATTATCCCTTTCACGCTCATGTCACGGCGAGGTACTGTAGAAGAAAAAACCGCAAAATCCGATCCAATTTATCGTAATCGATTAGTTAACATGTTGGTTAACCGTATTCTGAAACACGGAAAAAAATCATTGGCTTATCAAATTATTTATCGAGCTATGAAAAAGATTCAAAAAAAGACAGAAACAAATCCACTATCTGTTTTACGTCAAGCAATACGTGGAGTAACTCCCGATATAGCAGTAAAAGCAAGACGTGTAGGCGGATCTACTCATCAAGTTCCCATTGAAATAGGATCCACACAAGGAAAAGCACTTGCCATTCGTTGGTTATTAGGGGCATCCCGAAAACGTCCGGGTCGAAATATGGCTTTCAAATTAAGTTCCGAATTAGTGGATGCTGCAAAAGGGAGTGGCGATGCCATACGCAAAAAGGAAGAGACTCATAGAATGGCAGAGGCAAATAGAGCTTTTGCACATTTTCGTTAA	648	0.3843	MLTLKLFVYTVVIFFVSLFIFGFLSNDPGQFHTRSHRYIWIHIEFCGKPYLMKVIIPFTLMSRRGTVEEKTAKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRAMKKIQKKTETNPLSVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKLSSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR*	216

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo09g1514	215	SUPERFAMILY	Ribosomal protein S7	62	209	IPR036823	-
	Amo09g1514	215	Pfam	Ribosomal protein S7p/S5e	61	209	IPR023798	-
	Amo09g1514	215	CDD	uS7_Chloroplast	70	214	-	-
	Amo09g1514	215	Hamap	30S ribosomal protein S7 [rpsG].	61	215	IPR005717	GO:0003735\|GO:0006412\|GO:0015935
	Amo09g1514	215	SUPERFAMILY	Photosystem II reaction center protein I, PsbI	1	30	IPR037271	GO:0015979
	Amo09g1514	215	TIGRFAM	rpsG_bact: ribosomal protein uS7	63	215	IPR005717	GO:0003735\|GO:0006412\|GO:0015935
	Amo09g1514	215	PANTHER	30S RIBOSOMAL PROTEIN S7, CHLOROPLASTIC	61	215	-	-
	Amo09g1514	215	Gene3D	Ribosomal protein S7 domain	61	215	IPR036823	-
	Amo09g1514	215	PANTHER	RIBOSOMAL PROTEIN S7	61	215	IPR000235	GO:0006412
	Amo09g1514	215	Hamap	Photosystem II reaction center protein I [psbI].	1	36	IPR003686	GO:0009523\|GO:0009539\|GO:0015979\|GO:0016020

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo09g1514	Amo-Chr9	55222929	55223869	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo09g1514	81	209	Cytoplasmic Ribosomal Protein Gene Family	AT2G37270	35.294	4.61e-11	58.2

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo09g1514	K02992		-	rcu:125368899	303.138

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