Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g1461 TCTCTCTCTCTCTCTGCAAAACCTAGAAAGATCCGAGTTGCCATTTCCACCGCTGCAATCCCAACCTTCCGATTAAGTATTGACCTGATCAAGGGGACGAAGATGGAGGGAAAAACCGAGGATGAGGTGGTAGATATTGAGAGTGGTTCTAGTGGTTCTTTCAATGATGATTCTGATGATGAGGGATCTTTGCCTCCTGAAGTTGATGATGATAGAGTAAATCTTGAGGAACCTTTGACTGAGGAGGAGATACAAGACCTTATTTCTGAGTTGTTAGAAGTAGAGAGCAAGGCTGCAGAGGCCCAAGAAGCTCTTGAAGAGGAGTCTCTTGCCAAAGTGGAGAGTGATGTTAGACAAGAATTGCAGCAAACTCTGACAGAGGATGATTTGGAAACTGCTGTTGCTGATGAGATGGCTACTTTTAAAGAAGAGTGGGAAACTGTGCTGGACGACCTTGAAACTGAAAGTGCCAACTTGCTGGAACAACTCGACGGTGCTGGAATTGAGCTCCCAAGCCTTTATAAGTGGATTGAAAAGGAAGCTCCCAATGGTTGCCGCACTGAAGCATGGAAAAAGAGGAATCATTGGGTAGGGTTGCAGGCAACTACGGAAATTGCTGAATCAGTTGCTGSTGCTGAGAAGTATCTACAAGTAAACAGACCTGTTAGAAGGCGACATGGTAAACTACTTGAAGAGGGAGCTAGTGGATTTCTCCAAAAAAAASTTGGTGATGAAACCAAGGATCCTGTAAAGAAAGGAATGGAGGGAGATTGGGATTTGTTCAATAAAATAGTGTCTGATGGGAGTGGCACTGATGTTTCATTTGGCAGTAAGCACTGGGCTTCTGTTTATTTGGCCAGCACCCCACAGCAAGCTGCACTGATGGGACTCAAATTTCCTGGAGTTAATGAGGTAGAGGAGATTGACGATGTTGATGGCAATTCGGCTGATCCATTTGTTGCAGCTGCGATAGCAAATGAAAGAGAACTAGATCTTTCTGAGGAGCAAAAGAGACAATTTAAGAAGGTCAAAGAAGAGGATGATGCTATTGTTGATAGGAAGCTTCAAATCCATTTGAAACAAAGGAGGCGTCGGAAGAAAAGTAAACAGAACGATAAACTTGAAGATTTTGATGCTGGTTACGATCTTGAAAAGGATAATGCTATGAGTACTGGTGACTTGGCTGATCCACCCAAATCTTTGTTGGATGATATTATTGAACAGCGGGGAACTAAGCGTTTGAATGATGGTGAGCTCGACACTGATAATAAAAAGTCTCGTACTATTAGTGATGACAGTGACGATGACACAGATGCCATTGAAGACAAGGTAGATAGGAATATGAGTACTCTAGAGGAAAAAGGCTTATTAAACAGTGGTGCTGATACTCTTCCTTCAGTGTGTCCAAATGAGAAATTTCACTGCACAATTTGTCATCAAGTGGCTCTTGAAGTTCACTCACACCCTCTGTTGAAGGTGATTATTTGTGGAGATTGCAATTGCTTAATGGAGGAAAAGATATGCCGAAAGGACCTGAGTCTTGATTCTCCCTCAAGTCATTGTGCATGGTGTGGAGGAAGCAGTGGATTAATTAATTGTAAATCATGCACAATGTTATTCTGCACCAACTGCATAAAGAAGAATCTTGGTGCAGAATCTCTTACTAAAGCTCAGGCCACTGGCTGGGATTGTTGTTTTTGCCAGCCAAATAGTCTGCAAAGACTGACACTGCTATTGGAGKAAGCTATGGGATCTACTGCTYAACTAAGAAGGCGCAAAAAGAAGATTCGAAGGATACTCGATGATACGGAATTAGGTGAAGAAACAAAAAAGAAAATAGCAATTGAAAAGGAACGTCAGGAACGCTTGAAGTCTTTGCGAGGCCAGTTCTCTGCTTCACCAAATGAAATGAGCTCATCAAATTTATCCGAAGGGGCTAGTGTTGAAGTTCTTGGCGATGCGGCATCAGGTTACATAGTGAATGTTGTGAGGGAGAAAGGTGAAGAAGCTGTCAGAATTCCTCCGAGCATCTCAGCCAAACTCAAAGCCCACCAGATTGCAGGAATAAGATTTATGTGGGAAAATATAGTAGAGTCAATAAGAAAAGTGAAGTCTGGGGATAAAGGTCTTGGCTGTATTCTAGCTCATACCATGGGCCTTGGTAAAACTTTTCAGGTGATTGCTTTCTTGTACACTGCAATGAGGTGTGTTGATTTGGGGTTAAGGACCGCACTTATAGTCACACCTGTCAATGTTCTGCATAATTGGCGGCAGGAGTTTATTAAGTGGAAGCCCTCAGAGTTAAAGCAACTCAGAGTCTTCATGCTGGAAGATGTACCAAGAGATAGGAGGGTTGAGCTGCTTGCAAAGTGGAGAACCAAAGGTGGTGTCTTTTTGATTGGTTATACTGCTTTCCGTAATTTATCTTTTGGYAAGCATGTGAAAGACCGGAATGTGGCCAGAGAGATTTGCCATGCTTTGCAGGATGGACCGGACATTCTTGTTTGTGATGAAGCCCATATGATTAAAAATACAAGGGCTGARGTAACTCATGCCTTGAAACAAGTAAAATGCCAAAGAAGAATTGCCCTGACTGGATCGCCCCTTCAAAACAATCTCATGGAATACTATTGTAATCCTATAGAGAATGGTCAACACACTAATTCGACSCTCACAGATGTGAAAATTATGAACCAAAGATCACATATTCTCTATGAACAGTTAAAAGGCTTTGTCCAAAGAATGGACATGACTGTGGTGAAAAAGGATCTACCCCCCAAAACTGTCTTCGTGGTAACCGTCAAGCTTTCTTTGTTACAAAGAAAACTGTACAAGAGATTCCTTGATGTGCATGGGTTCAGTAAAGACAGCGCTCATGAAAAGTTTGGAAAAAGATGTTTTTTTGCTGGTTACCAGGCGTTAGCCCGGATATGGAACCACCCTGGGATCTTGCAATTAACAAAAGAAGACAAGGACTATGTAAGACAAGAAGAAGCTGTTGAGAATTTTATCGTGGATGACTGCAGCAGTGATGATAATTCTGATATTAATGCTGTTGGAGAGAAGATGAGGTATGCAAATGATTTGCCGCAAAAGAAAGATGGTACTGGCTTTTTCGTAAAGGGTTGGTGGCATGATCTACTTCCTGGAAAGATTTATAGAGAGCCTGATCATGGTGGCAAAATGGTTTTGCTACTAGAGATATTAACCATAAGTTCTAGTAGCATACCAACGCTAGACCTCATAGAACTTTATCTCTCAAAGATACCTCGACATGGCAAACCTGGGAAGCGTTGGAAGAAGGGGAAAGATTGGTATCGGCTGGATGGAAGGACAGAGAGCTCTGAAAGGCAGAGGATTGTTGAGAGATTTAATGAGCCCTCAAATAAGAGGGTAAAATGCACTCTGATTTCAACCAGAGCAGGTTCTTTGGGTATTAACCTTCATTCTGCTAACCGCGTTGTTATAATTGATGGTTCTTGGAATCCAACATACGATCTGCAGGCCATCTATCGTGCTTGGAGGTATGGGCAGACAAAACCTGTATTTGCATACCGATTGCTGGCTCATGGCACCATGGAAGAGAAAATATATAAGCGCCAGGTAACAAAGGAGGGGCTTGCCGCTAGAGTGGTTGATAGGCAACAGGTGCATAGGACCATATCTAAAGAAGAGATGTTACATCTGTTTGAGTTTGGTGATGATGAGAACCCTGAGACTTTGGCTGAACTTAATCAAGAAAATGGCAGCAGTAGTAATACAGTTAAACATACAACACCACATTCAAATGGAAGTAGCAACTCTGATAAGCTAATGGAAAGCTTACTTAAAAATCATCAACCCCGMTGGATTGCCAATTATCATGAACATGAAACCCTGTTACAAGAAAATGAAGAGGAGAAGCTATCAAAAGAGGAGAAAGACATGGCTTGGGAGGTGTACAAYAAATCACTTGAATGGGAAGAAGTGGGGAGGGTACCAATTAGTGACCCCATGCCTGATCAAAAGGCAGAGATGGCTGCAAGTTCAAAACTACAACAGGTGAAAGACCCTCTTAGCATGGTGTCAAGTAGTAGAATAAGGAATCGTTTTAACATGAGAAAGTGCACAAACCTTGCACACATGCTCACACTCAGAAGTCAGAGAATAAAACAAGGTGGCTGTACAGTTTGTGGGGAATGTGCTCAGGAGATCAGAGAAAGTAAAAGATTAATTATTCTTGGATCAATAGTTCCACTTACAATGGAAGTTAAGGATAATTTGACTTGTTACTTTCTCACTCTATCATCATGCTCATTTTCGGAAATTCATATTTTAACACTAATATCAAAACAAATAACTTTAATTACAATACTAGCAATAAAATAA 4368 0.4153 SLSLSAKPRKIRVAISTAAIPTFRLSIDLIKGTKMEGKTEDEVVDIESGSSGSFNDDSDDEGSLPPEVDDDRVNLEEPLTEEEIQDLISELLEVESKAAEAQEALEEESLAKVESDVRQELQQTLTEDDLETAVADEMATFKEEWETVLDDLETESANLLEQLDGAGIELPSLYKWIEKEAPNGCRTEAWKKRNHWVGLQATTEIAESVAXAEKYLQVNRPVRRRHGKLLEEGASGFLQKKXGDETKDPVKKGMEGDWDLFNKIVSDGSGTDVSFGSKHWASVYLASTPQQAALMGLKFPGVNEVEEIDDVDGNSADPFVAAAIANERELDLSEEQKRQFKKVKEEDDAIVDRKLQIHLKQRRRRKKSKQNDKLEDFDAGYDLEKDNAMSTGDLADPPKSLLDDIIEQRGTKRLNDGELDTDNKKSRTISDDSDDDTDAIEDKVDRNMSTLEEKGLLNSGADTLPSVCPNEKFHCTICHQVALEVHSHPLLKVIICGDCNCLMEEKICRKDLSLDSPSSHCAWCGGSSGLINCKSCTMLFCTNCIKKNLGAESLTKAQATGWDCCFCQPNSLQRLTLLLEXAMGSTAXLRRRKKKIRRILDDTELGEETKKKIAIEKERQERLKSLRGQFSASPNEMSSSNLSEGASVEVLGDAASGYIVNVVREKGEEAVRIPPSISAKLKAHQIAGIRFMWENIVESIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRCVDLGLRTALIVTPVNVLHNWRQEFIKWKPSELKQLRVFMLEDVPRDRRVELLAKWRTKGGVFLIGYTAFRNLSFGKHVKDRNVAREICHALQDGPDILVCDEAHMIKNTRAEVTHALKQVKCQRRIALTGSPLQNNLMEYYCNPIENGQHTNSTLTDVKIMNQRSHILYEQLKGFVQRMDMTVVKKDLPPKTVFVVTVKLSLLQRKLYKRFLDVHGFSKDSAHEKFGKRCFFAGYQALARIWNHPGILQLTKEDKDYVRQEEAVENFIVDDCSSDDNSDINAVGEKMRYANDLPQKKDGTGFFVKGWWHDLLPGKIYREPDHGGKMVLLLEILTISSSSIPTLDLIELYLSKIPRHGKPGKRWKKGKDWYRLDGRTESSERQRIVERFNEPSNKRVKCTLISTRAGSLGINLHSANRVVIIDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLLAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDENPETLAELNQENGSSSNTVKHTTPHSNGSSNSDKLMESLLKNHQPRWIANYHEHETLLQENEEEKLSKEEKDMAWEVYNKSLEWEEVGRVPISDPMPDQKAEMAASSKLQQVKDPLSMVSSSRIRNRFNMRKCTNLAHMLTLRSQRIKQGGCTVCGECAQEIRESKRLIILGSIVPLTMEVKDNLTCYFLTLSSCSFSEIHILTLISKQITLITILAIK* 1456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g1461 1455 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 703 886 IPR014001 -
Amo09g1461 1455 SMART ultradead3 677 897 IPR014001 -
Amo09g1461 1455 MobiDBLite consensus disorder prediction 34 71 - -
Amo09g1461 1455 Pfam SNF2-related domain 704 983 IPR000330 GO:0005524|GO:0140658
Amo09g1461 1455 Coils Coil 84 111 - -
Amo09g1461 1455 SMART helicmild6 1080 1177 IPR001650 -
Amo09g1461 1455 Gene3D - 653 914 IPR038718 -
Amo09g1461 1455 Coils Coil 142 169 - -
Amo09g1461 1455 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1061 1225 IPR001650 -
Amo09g1461 1455 Coils Coil 326 346 - -
Amo09g1461 1455 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 667 914 IPR027417 -
Amo09g1461 1455 MobiDBLite consensus disorder prediction 1242 1274 - -
Amo09g1461 1455 CDD SF2_C_SNF 1048 1188 - -
Amo09g1461 1455 ProSiteProfiles ADD domain profile. 463 595 IPR025766 -
Amo09g1461 1455 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 920 1245 IPR027417 -
Amo09g1461 1455 Pfam Helicase conserved C-terminal domain 1102 1177 IPR001650 -
Amo09g1461 1455 MobiDBLite consensus disorder prediction 400 433 - -
Amo09g1461 1455 Gene3D - 925 1265 IPR027417 -
Amo09g1461 1455 MobiDBLite consensus disorder prediction 387 445 - -
Amo09g1461 1455 MobiDBLite consensus disorder prediction 1237 1274 - -
Amo09g1461 1455 Coils Coil 1287 1307 - -
Amo09g1461 1455 PANTHER RAD54-LIKE 60 1399 IPR044574 GO:0016887
Amo09g1461 1455 CDD ADDz_ATRX 471 569 - -
Amo09g1461 1455 PANTHER RAD54-LIKE 60 1399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g1461 Amo-Chr9 51782043 51805211 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g1461 1079 1230 RAD5 or RAD16-like Gene Family AT5G43530 32.237 1.01e-16 84.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Amo09g1461 SNF2_N 1.4e-37 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g1461 K10779 - gmx:100794911 2007.26