Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g1411 ATGTGTTCATCGGTGAAGGGGCAATACGAGATAAGCGAAGAAATAGGGAGAGGGCGTTTCGGCACAATATACCGGTGCTACGACGTCGTTTCAGGAGAAGCATACGCCTGCAAAGTAATCGACAAATCAATCCTAGCAGACGAAACGGACCAGCAGTGTATACTTAACGAACCGAAGCTGATGTCACTCCTAACCCCTCACCCTAACATCCTCACTATCCACAACGCCTTCGAAGACGACCGCTCTCTCTCTCTCATCCTCGACCTCTGCCTTCCCCTCACCCTCCTCGACCGCCTAACTGCCTCAACTGTCACTCCATTCCCCGACGCCTGCCACGTCATCACCCAGCTTCTAGAAGCCGTTTCTCACTGCCACCGCAGCGGCATCGCGCATCGCGACTTGAAGCCCGAGAATATTCTCTTTGATTCCAGAGACATCTTGAAGCTCGCCGACTTTGGCTCCGCCGAGTGGTTCGCCGGCGATGGCGGGGGTCTGATGAGCGGTGTGGTGGGGACGCCGTATTACGTGGCGCCGGAAGTGTTGATGGGGAGGGAGTATGATGAGAAAGTTGATGTGTGGAGCTGTGGAGTTATACTTTACATGATGTTGGCCGGTGCGCCGCCGTTTTACGGTGATTCCGCCGTCGAGATTTTCGAGTCTGTTCTTCGAGGGAACTTGAGGTTTCCGCCGAGGCTCTTCCGGAATGTGTCGCCGGCCGCCAAGGATTTGTTGCGGAAGATGATATGTAAGGACCCTTCTAGGAGGATCTCCGCCGAACAAGCCTTGAGGCACTCATGGATCTTGAGGGGAGGTGAGAGTGAGGCAGCTGAACTAACTTGA 840 0.5464 MCSSVKGQYEISEEIGRGRFGTIYRCYDVVSGEAYACKVIDKSILADETDQQCILNEPKLMSLLTPHPNILTIHNAFEDDRSLSLILDLCLPLTLLDRLTASTVTPFPDACHVITQLLEAVSHCHRSGIAHRDLKPENILFDSRDILKLADFGSAEWFAGDGGGLMSGVVGTPYYVAPEVLMGREYDEKVDVWSCGVILYMMLAGAPPFYGDSAVEIFESVLRGNLRFPPRLFRNVSPAAKDLLRKMICKDPSRRISAEQALRHSWILRGGESEAAELT* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g1411 279 ProSiteProfiles Protein kinase domain profile. 9 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo09g1411 279 CDD STKc_CAMK 8 266 - -
Amo09g1411 279 SMART serkin_6 9 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo09g1411 279 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Amo09g1411 279 SUPERFAMILY Protein kinase-like (PK-like) 7 268 IPR011009 -
Amo09g1411 279 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Amo09g1411 279 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE 1 4 275 - -
Amo09g1411 279 PANTHER SERINE/THREONINE-PROTEIN KINASE 4 275 - -
Amo09g1411 279 PIRSF ILK 3 263 - -
Amo09g1411 279 Gene3D Transferase(Phosphotransferase) domain 1 2 278 - -
Amo09g1411 279 Pfam Protein kinase domain 9 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g1411 Amo-Chr9 46571879 46573298 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g1411 5 273 EF-hand Containing Proteins AT1G50700 39.706 4.84e-71 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Amo09g1411 Pkinase 9.3e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g1411 - K08794 adu:107465518 530.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g1845 19 56112035 56113671 Amo09g1411 09 46571879 46573298 hybridization