Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g1384 GAAATTCTATCTATAGAACTAGGTTTTAACAACCTCGCGCGCATGCCCCCCTGTGTAACTTCTTTTGTGCGAGTTATATTCTTCGCTTTTGGTTCTGTACAACCTAGTCACACGCCTCCTTGTGTGACTTCTATTATGGCAGCTATATTCTTCACTTTTGGTTTTGTAGGCCATTTAGAGCGTTGGGTGAAATCAATTTTTGAGACTATCATGGCACCTAATCCTAGAGTTACCAATGCCTATAATGCTATGAGGACCTTAGGCATTTCTGATGATGAGGTGAGGCCTGTCTTGAAAAGGTTGCTCAAAGTGTATGGTAATAGCTGGGAGCTTATTGAAGAAGACAATTATCAAACACTTGTACATGCATACTTTGAGTCAATGGAATATCAGCAAGGGGAAGGTAAGGGAAAAGCTCCAATCAGTAATCATGATGGAGAAAGAGCAAGACTGAAACTACAGATGATATCTGTAGAGGACAATGAAATACTTTCAAAGACATCCAAAAAGGAAATCATTAGGCCATCTCAGGCATCTAAAGAAGATATAAAACTGACAAATAGTTCTCAACCATTGCAGACAAGGTTGAGTGAGGTAGAAATTATCTCAAGTTTATCTTGCATGGATGCTAGAGATAGTAGAAAATTGTGCCATGAGAATGCAGCATCTGCAGGGCACTGTGGAGATTATTTTGATGGATCTAGCCGTTCCCACATCCAGAAGATACATATGTCAAGTGATCGTTATGAGAAAGAACTTATAATACTAAAAGCTAAGAAACCGAAATTACATCTTGGACCTGTTTCATCACATCTTAAAGGCCCTTGTGATGATTCAAATGTAAATCGTCGTTTCAAATTTATATCAGCTCTTTATCAAAATGGGCCAAATCCCAATCATGCCAATTTGACTAACATGGTACAACAAGTTGTTGTCCATCCTGAATATAATTCTGCAGGCCCATGCGATGATTCAAACATAAATACTCGTTTCAAATCTATATCATCTCTTTATCAAAATGGGCCAAATCCCAATCATGCGAATTTGACTAACATGGTACAACGAGCTGTTATTCATCCTGAACATAATTCTAGAGGCCCATGCGATGATTCAAATGTAAATTGTCGTTTCAAATCTATATCAGCTCTTTATCAATATGGGCCAAATCTCAACCATGCCAATTTAACAAAAATGGCACAACAAGCTATTGTTCATGCTGAAAATAGTTATGTTCAATTTTTGAGTGACATAACAAAAGGTTCTGAAAAGGTTGTAATTTCATTATTAGATGACACTGGAAGTGAGGAGTTGCCTAAGTTTAATTACATACCAAATAATATAATCTATCAAAATGCTAATGTGAACATTTCACTTGCTCGGGTTGCGGATGAGGGTTGTTGTTCTGATTGTTTAGGCAACTGTCTTTCTTTGACATTTCCTTGTGCATGTTCTCAAGAAACTGGTGGGGAGTTTGCTTATACTCGAGAAGGTTTGTTGAAGGAAAAGTTCTTAGAAGCATGCATAGCTATGAAAATCAAACCTCAGCCATATCATTTTGTGTATTGTCAAGAATGCCCAATTTATAAAGGGAGTGAGCACATGCCTGAAGAATGCAAGGGGCATTTGGTTAGAAAGTTTATAAAGGAATGTTGGAGGAAATGTGGATGTGATATGCAGTGTGGAAATCGGGTAGTGCAGCGAGGTTTAAGATGTAAACTGCAGGTATTCTTGACTCAGGAAGGAAAGGGCTGGGGCATTAGAACACTAGAAGATTTGCCCAAAGGTTGCTTTGTATGTGAGTACGTCGGAGAAATATTAACCAATGCAGAATTGTATGAAAGGGTATTACACAAAAGCAGCAAGGACAGACATACATATCCTGTAACCCTTGATGCAGATTGGGGCTCAGAAAGGGTGTTAAAGGATGATGAGGCACTGTGCTTAGATGCAACTTATAATGGAAATATTGCAAGGTTTATCAATCATAGATGCTTTGATGCAAATTTGATAGACATTCCTGTTGAAGTGGAGATTCCTGATCGCCACTATTATCATATTGCTCTCTTTACTAATAGGAAAGTGAAAGCATACAAAGAGCTGACATGGGATTATGGTATTGACTTTGATGATCAGGAACATCCTATTAAAGCATTTCAATGCTGCTGTGGAAGTACCTTCTGCCGTGACAAGAAAAAGAAAGGACTTGATATACTTTACAGTTAG 2223 0.381 EILSIELGFNNLARMPPCVTSFVRVIFFAFGSVQPSHTPPCVTSIMAAIFFTFGFVGHLERWVKSIFETIMAPNPRVTNAYNAMRTLGISDDEVRPVLKRLLKVYGNSWELIEEDNYQTLVHAYFESMEYQQGEGKGKAPISNHDGERARLKLQMISVEDNEILSKTSKKEIIRPSQASKEDIKLTNSSQPLQTRLSEVEIISSLSCMDARDSRKLCHENAASAGHCGDYFDGSSRSHIQKIHMSSDRYEKELIILKAKKPKLHLGPVSSHLKGPCDDSNVNRRFKFISALYQNGPNPNHANLTNMVQQVVVHPEYNSAGPCDDSNINTRFKSISSLYQNGPNPNHANLTNMVQRAVIHPEHNSRGPCDDSNVNCRFKSISALYQYGPNLNHANLTKMAQQAIVHAENSYVQFLSDITKGSEKVVISLLDDTGSEELPKFNYIPNNIIYQNANVNISLARVADEGCCSDCLGNCLSLTFPCACSQETGGEFAYTREGLLKEKFLEACIAMKIKPQPYHFVYCQECPIYKGSEHMPEECKGHLVRKFIKECWRKCGCDMQCGNRVVQRGLRCKLQVFLTQEGKGWGIRTLEDLPKGCFVCEYVGEILTNAELYERVLHKSSKDRHTYPVTLDADWGSERVLKDDEALCLDATYNGNIARFINHRCFDANLIDIPVEVEIPDRHYYHIALFTNRKVKAYKELTWDYGIDFDDQEHPIKAFQCCCGSTFCRDKKKKGLDILYS* 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g1384 740 Pfam Pre-SET motif 417 563 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Amo09g1384 740 SMART preset_2 414 555 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Amo09g1384 740 CDD SET_SETDB-like 438 705 - -
Amo09g1384 740 SMART set_7 571 711 IPR001214 GO:0005515
Amo09g1384 740 ProSiteProfiles Pre-SET domain profile. 466 568 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Amo09g1384 740 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR2-LIKE PROTEIN 71 735 - -
Amo09g1384 740 Gene3D - 66 129 IPR043017 -
Amo09g1384 740 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 48 733 IPR025776 -
Amo09g1384 740 SUPERFAMILY SET domain 425 728 IPR046341 -
Amo09g1384 740 ProSiteProfiles SET domain profile. 571 705 IPR001214 GO:0005515
Amo09g1384 740 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 71 735 - -
Amo09g1384 740 Pfam SET domain 583 705 IPR001214 GO:0005515
Amo09g1384 740 Pfam Ubiquitin-binding WIYLD domain 76 129 IPR018848 GO:0018024
Amo09g1384 740 Gene3D SET domain 392 717 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g1384 Amo-Chr9 42886666 42899835 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g1384 547 728 C2H2 Transcription Factor Family AT2G23740 39.572 4.03e-29 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Amo09g1384 Pre-SET 9.2e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g1384 - - adu:107465821 877.856
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g1942 19 65280051 65299785 Amo09g1384 09 42886666 42899835 hybridization
Amo09g1384 09 42886666 42899835 Amo16g1512 16 27747671 27755444 PCT
Amo09g1384 09 42886666 42899835 Amo06g0307 06 4466056 4473946 PCT