Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g1314 ATGGAGTCAGAGCGAGACAAATACAGCATGATAAATTTTGAGGAGACCGAGTTGCGACTCGGTTTGCCGGGTGGGTCGAACGATGGCGAGTCATCACTAAGGAGCACTTGTACTACAACTGGAAAGAGGGGTTTCTCGGAGACTACTCCGTCTACTGTGGATCTAAAGCTGAATCTGAATCTTTCTTCTTCTTGTTGTTCTTCTTCTCTTAACAATGAATCCGTTTCAGCTTCTTCTGTCAACGTTGACAAGAACAAAGAGAAGAATGGTGGTGCTGCTGCTCCTACTTCTACACCTCCTGTTACTCGTTCTACCGACCCGGCGAAACCACCTGCCAAGGCACAAGTGGTAGGTTGGCCTCCAGTTAGGTCCTTCAGGAAGAACATAGTGAGCGGGCAGAAGAGCAACAAGGAAGAAGCGGAAAAGCCCGCCACCACCACCGTAGGTACAACTGCAACCGCGACCTCCGCGGCAACAAGCGGAAACGGAGGGGCGTACGTGAAGGTGAGCGTGGACGGAGCACCATACTTGAGGAAAGTGGACCTGAAGCAGTACAAGAGCTACAGAGAGCTGTCAGATGCGCTGGCAAAGATGTTCAGTGGCACCATGATAGAGGCAGCTGTCACTGGGCCCCATCACGAGTGCAAAGGAAATGGCCTCTTCAGCTTCAATGGATCTGACTATGTCCCCACTTATGAAGACAAAGACGGTGATTGGATGCTCGTCGGTGACGTTCCCTGGGAAATGTTCGTAGAATCATGCAAGCGCCTTCGCATAGTGAAAGGTTCTGAGGCAACTGGGCTTGGAGTTCCAAGAGCAGCAGCGGAAGAGCAGTGCAAGATCAGAAGCTGA 852 0.5129 MESERDKYSMINFEETELRLGLPGGSNDGESSLRSTCTTTGKRGFSETTPSTVDLKLNLNLSSSCCSSSLNNESVSASSVNVDKNKEKNGGAAAPTSTPPVTRSTDPAKPPAKAQVVGWPPVRSFRKNIVSGQKSNKEEAEKPATTTVGTTATATSAATSGNGGAYVKVSVDGAPYLRKVDLKQYKSYRELSDALAKMFSGTMIEAAVTGPHHECKGNGLFSFNGSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIVKGSEATGLGVPRAAAEEQCKIRS* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g1314 283 MobiDBLite consensus disorder prediction 69 103 - -
Amo09g1314 283 Gene3D - 159 274 - -
Amo09g1314 283 MobiDBLite consensus disorder prediction 28 50 - -
Amo09g1314 283 MobiDBLite consensus disorder prediction 69 115 - -
Amo09g1314 283 PANTHER AUXIN-RESPONSIVE PROTEIN IAA16 11 272 - -
Amo09g1314 283 MobiDBLite consensus disorder prediction 19 50 - -
Amo09g1314 283 Pfam AUX/IAA family 15 269 IPR033389 -
Amo09g1314 283 ProSiteProfiles PB1 domain profile. 164 267 IPR000270 GO:0005515
Amo09g1314 283 SUPERFAMILY CAD & PB1 domains 159 259 - -
Amo09g1314 283 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 272 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g1314 Amo-Chr9 37856714 37861351 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g1314 134 268 B3 DNA Binding Superfamily AT4G23980 31.111 1.29e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Amo09g1314 AUX_IAA 1.8e-73 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g1314 K14484 - gmx:100796888 266.544