Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g1299 ACGACGTGCACGCGTGGTACAGAAAACGCTGAGGCACAAGTGGTAGGTTGGCCTCCAGTTAGGTCCTTCAGGAAGAACATAGTGAGCGGGCAGAAGAGCAACAAGGAAGAAGCGGAAAAGCCCGCCACCACCACCGTAGGTACAACTGCAACCGCGACCTCCGCGGCAACAAGCGGAAACGGAGGGGCGTACGTGAAGGTGAGCGTGGACGGAGCACCATACTTGAGGAAAGTGGACCTGAAGCAGTACAAGAGCTACAGAGAGCTGTCAGATGCGCTGGCAAAGATGTTCAGTGGCACCATGATAGAGGCAGCTGTCACTGGGCCCCATCACGAGTGCAAAGGAAATGGCCTCTTCAGCTTCAATGGATCTGACTATGTCCCCACTTATGAAGACAAAGACGGTGATTGGATGCTCGTCGGTGACGTTCCCTGGGAAATGTTCGTAGAATCATGCAAGCGCCTTCGCATAGTGAAAGGTTCTGAGGCAACTGGGCTTGGAGTTCCAAGAGCAGCAGCGGAAGAGCAGTGCAAGATCAGAAGCTGA 546 0.5421 TTCTRGTENAEAQVVGWPPVRSFRKNIVSGQKSNKEEAEKPATTTVGTTATATSAATSGNGGAYVKVSVDGAPYLRKVDLKQYKSYRELSDALAKMFSGTMIEAAVTGPHHECKGNGLFSFNGSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIVKGSEATGLGVPRAAAEEQCKIRS* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g1299 181 PANTHER AUXIN-RESPONSIVE PROTEIN IAA16 9 170 - -
Amo09g1299 181 SUPERFAMILY CAD & PB1 domains 56 157 - -
Amo09g1299 181 Pfam AUX/IAA family 7 167 IPR033389 -
Amo09g1299 181 Gene3D - 57 172 - -
Amo09g1299 181 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 9 170 IPR003311 GO:0005634|GO:0006355
Amo09g1299 181 ProSiteProfiles PB1 domain profile. 62 165 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g1299 Amo-Chr9 36903971 36906875 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g1299 32 166 B3 DNA Binding Superfamily AT4G23980 31.111 2.98e-09 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Amo09g1299 AUX_IAA 5.3e-66 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g1299 K14484 - egr:104415430 197.593